Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_2107 |
Symbol | kdsA |
ID | 7386906 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 1729983 |
End bp | 1730837 |
Gene Length | 855 bp |
Protein Length | 284 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 643651315 |
Product | 2-dehydro-3-deoxyphosphooctonate aldolase |
Protein accession | YP_002549510 |
Protein GI | 222148553 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG2877] 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase |
TIGRFAM ID | [TIGR01362] 3-deoxy-8-phosphooctulonate synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCGCTT CTGCCCTGCC GAATGCAACC GTCACCATTG GCGAAGGCGC CAAGACGGTC TCCTTCTCCA ACAGTGCGAA AATTTCGCTG ATCTGCGGTC CCTGCCAGAT GGAAAGCCGC GAGCACGCCT TCATGATGGC GGGCGGGATC AAGGAAATCT GCGACAAACT CGGCATTGGC CTTGTCTATA AATCCTCCTT CGACAAGGCA AACCGCACCT CGCTGAAGGC TGGGCGCGGG ATTGGCATCG AGCAGGGGTT GGCGATCTTT GCCGATCTGA AGAAGGAATT CGGTTTTCCT GTCCTGACAG ACATTCACAA CGAAGACCAG TGCGCCGAAG TGGCTGAAGT GGTTGATGTG TTGCAGATCC CGGCCTTCCT GTGCCGCCAG ACCGATCTTC TGATTGCTGC GGCGAAGACC GGGAGGGCGA TCAATGTCAA GAAGGGTCAG TTTCTGGCGC CCTGGGACAT GAAAAATGTC ATGGAAAAAA TTACCCTCTC GGGCAATCCC AATGTGATGC TCTGCGAGCG CGGCGCTTCC TTCGGTTATA ACACGCTGGT CTCCGACATG CGCTCGCTGC CGATCATGGC AGGCATGGGT GCGCCGGTGA TCTTCGATGC CACGCACTCG GTACAGCAAC CGGGCGGGCA GGGCGGCTCG ACCGGTGGCC AGCGCGAATT CGTGGAAACG CTGGCACGCG CTGCTGTGGC GGTTGGTGTG GCGGGCCTCT TCATCGAATC GCATCAGGAC CCAGACAATG CACCGTCCGA TGGCCCCAAT ATGGTTTACC TGAAGGACCT TGAGCGTTTG CTGGAAAAGC TGTTGGCGTT CGACGCCGTC ACCAAGGCGG CCTGA
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Protein sequence | MTASALPNAT VTIGEGAKTV SFSNSAKISL ICGPCQMESR EHAFMMAGGI KEICDKLGIG LVYKSSFDKA NRTSLKAGRG IGIEQGLAIF ADLKKEFGFP VLTDIHNEDQ CAEVAEVVDV LQIPAFLCRQ TDLLIAAAKT GRAINVKKGQ FLAPWDMKNV MEKITLSGNP NVMLCERGAS FGYNTLVSDM RSLPIMAGMG APVIFDATHS VQQPGGQGGS TGGQREFVET LARAAVAVGV AGLFIESHQD PDNAPSDGPN MVYLKDLERL LEKLLAFDAV TKAA
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