| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1872 |
|---|
| Symbol | |
|---|
| ID | 7387189 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 1547496 |
|---|
| End bp | 1548590 |
|---|
| Gene Length | 1095 bp |
|---|
| Protein Length | 364 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 643651152 |
|---|
| Product | Purine nucleoside permease protein |
|---|
| Protein accession | YP_002549349 |
|---|
| Protein GI | 222148392 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG5042] Purine nucleoside permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTGCCAT TGCCCTTCGA TAAAGAGATC TATCCTATGA TGCCAAGATT GCCTGCATTC
GCCACTGCGA TGATTGTCAC GGCCTTGACG GTGGCGTCCA GCGCCATTGT CAGTCAAGCC
GCGTCGTCGG CTTCCAGCCG GGGAGTGAAA ACAATCGCTC CGAAAGTTCT TGTCATCACG
ATGTTTGGCG AGGAGACCAA GCCTTGGCTG GCGGGACGCA AGCTGACGAC TAAGGTTAAG
GTGCCTGGTA TGTCGAAAGA GTATCCTGAG GTCGCTTGCG ATCGTCAGGG CCTCTGCGTG
ATGACCACGG CAATGGGCTA TGCCAATGCG GCGAGTTCGA CCATGGCGGT CGCGTTCGAT
CGTCGGTTTG ACCTTCGCAA CACCTATGTG TTGATTGCAG GCATTGCGGG CGTCAATCCG
AAGGAAGGAA CTCTGGGATC TGCGCTCTGG GCCAGATATG TGGTGGATGG CGGATTGCGG
CATGATATCG ATGCCCGCCA GATCGACAAG GATTGGCCGG ACGGGCAGGT GCCACTGGGT
GCGGCAAATC CGACCGGCAA GCCGACCTGG GCGGCGGGGA CAGAAGTCTA CGCGCTGAAC
GAGGCGCTGG TCCAGAAGGC CATGGCGCTG ACCGGTTCCG TCGAATTGTT GGACAGCGAT
GCCGCCAAGA CTTATCGCGC CGCCTATGCC TCGCCGGCAG CCAAGGCTGC CCCGTCTGTG
AAGATTTGCG ACACGGTCTC AGGCGATACC TATTGGCATG GGGTAAAGGA TGCTGAAGCC
ACAGAACGGT TTGCGGCATT GGTCACCGAT GGGAAAGCCC ATTACTGCAC CACCCAAATG
GAGGATAATG CGACGCTGAC AGCTTTGAAG CGGGCGTCGG AGGCCAGGCG CCTCGATTTC
AACCGTATTC TGGTGTTGCG CACGGCTTCC AATTTTGATC GTGAGCCGTT TGGCCGCACC
GCGATCGAAT CGCTTACGTC GAAGTCCGGC GGCTTCATGC CATCAGTCAC AAATGCTTAT
AGGGTGGGGA GTCGGTTCGC CGATGCCGTT ATCGCGGACT GGAAAACGTG GAAGGAGCGC
GATGGCGGAA AATAA
|
|---|
| Protein sequence | MVPLPFDKEI YPMMPRLPAF ATAMIVTALT VASSAIVSQA ASSASSRGVK TIAPKVLVIT
MFGEETKPWL AGRKLTTKVK VPGMSKEYPE VACDRQGLCV MTTAMGYANA ASSTMAVAFD
RRFDLRNTYV LIAGIAGVNP KEGTLGSALW ARYVVDGGLR HDIDARQIDK DWPDGQVPLG
AANPTGKPTW AAGTEVYALN EALVQKAMAL TGSVELLDSD AAKTYRAAYA SPAAKAAPSV
KICDTVSGDT YWHGVKDAEA TERFAALVTD GKAHYCTTQM EDNATLTALK RASEARRLDF
NRILVLRTAS NFDREPFGRT AIESLTSKSG GFMPSVTNAY RVGSRFADAV IADWKTWKER
DGGK
|
|---|
| |