| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1562 |
|---|
| Symbol | |
|---|
| ID | 7387370 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | - |
|---|
| Start bp | 1307954 |
|---|
| End bp | 1308550 |
|---|
| Gene Length | 597 bp |
|---|
| Protein Length | 198 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 643650919 |
|---|
| Product | glutathione S-transferase related protein |
|---|
| Protein accession | YP_002549124 |
|---|
| Protein GI | 222148167 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0625] Glutathione S-transferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.572147 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCTGC TTTATGCTCC CGCCTCGCCC TATTCCTCCA AGGTCCGGAT GGCCGCCCGC
GCCACCGGCA TTACCCTTGA GGAAATCAAG GTCGATACCA ATGCCAACCC GCCTGAATTG
ATTGACAACA ATCCGCTGGG CAAGATCCCG ACCCTGATTA CCGATGAAGG CCAGTCGATT
TACGATAGCC GCGCCATCAT GCAGTACCTG AACCGTATCT CTGACGGTGG CCTCTATCCG
AAAAAGGACG AAAAGCGCAC CGAGGCCGAG GTGCTGGAAG CGCTCTGCGA TGGCATCACC
GATTGCCTTC TGGCGATCGT CTATGAGAAG CGCCTGCATC CGCCGGAAAA GATCCACCAG
CCCTATATCG ACCGGCAATG GGAAAAGGTC ACACGCGGCC TGGACTATCT CGAAACCCAT
ATGCCGAAGA TGGGCAAGAA GCTGAACGGC GGCCATTTTT CCATGGCGGG CCTGCTCGGC
TACCTGATGC TGCGCTTTCC CGGCGAATGG GAAAATGGTC ATGTGGCGCT GACCGAATGG
CCGGTGCTGT TTGCCAAGAA ATTCGATGGG TATCAGTTGC TGCGACCGCA GGCCTGA
|
|---|
| Protein sequence | MKLLYAPASP YSSKVRMAAR ATGITLEEIK VDTNANPPEL IDNNPLGKIP TLITDEGQSI
YDSRAIMQYL NRISDGGLYP KKDEKRTEAE VLEALCDGIT DCLLAIVYEK RLHPPEKIHQ
PYIDRQWEKV TRGLDYLETH MPKMGKKLNG GHFSMAGLLG YLMLRFPGEW ENGHVALTEW
PVLFAKKFDG YQLLRPQA
|
|---|
| |