| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1239 |
|---|
| Symbol | |
|---|
| ID | 7387623 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 1046666 |
|---|
| End bp | 1047181 |
|---|
| Gene Length | 516 bp |
|---|
| Protein Length | 171 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 643650684 |
|---|
| Product | acetyltransferase |
|---|
| Protein accession | YP_002548890 |
|---|
| Protein GI | 222147933 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1670] Acetyltransferases, including N-acetylases of ribosomal proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCATCGA CCACACTCTC CCGCATCTGC CGCGCCGACG GGGCGGATCT GGTGGCGGCC
AATCTGGCCA GCCGCGATTA CCATGCGCCC TGGGCGGCAC CCTTCACCGA TCTCGATGGT
TTCGAGGCCT ATCTCAGCCT GACGATCAGC GGTGCCAATA TTGGTTTGAT TGCCCGAGAG
TCAGACAGTC ACGGTGTGGT CGGGGTCTTT ACCCTGAGTC AGATCGTGCT GGGCAACTTC
AGAAGCTGCT ATCTCGGCTA TTACGGCATG GCTGCCTTTG CCGGGCGCGG ATTGATGACG
GACGCGCTGA ACGCGGTTAT TGCCCATGCC TTCACGGAGG TGGGCTTGAA CCGGGTCGAG
GCCAATATCC AGCCGGAAAA CCTGCGCTCG ATTGCACTTG TCGCGCGCTG CGGCTTTGAG
AAGGAAGGTT TTTCCAGGCG CTACCTGAAA ATCGGCGGGG AATGGCGCGA TCATGAGCGC
TGGGCCAAGG TGGTGTTTCC GTCACGAAGC GGTTGA
|
|---|
| Protein sequence | MSSTTLSRIC RADGADLVAA NLASRDYHAP WAAPFTDLDG FEAYLSLTIS GANIGLIARE
SDSHGVVGVF TLSQIVLGNF RSCYLGYYGM AAFAGRGLMT DALNAVIAHA FTEVGLNRVE
ANIQPENLRS IALVARCGFE KEGFSRRYLK IGGEWRDHER WAKVVFPSRS G
|
|---|
| |