| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1212 |
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| Symbol | xylF |
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| ID | 7387604 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 1027898 |
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| End bp | 1028938 |
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| Gene Length | 1041 bp |
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| Protein Length | 346 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 643650665 |
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| Product | ABC transporter substrate binding protein (xylose) |
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| Protein accession | YP_002548871 |
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| Protein GI | 222147914 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG4213] ABC-type xylose transport system, periplasmic component |
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| TIGRFAM ID | [TIGR02634] D-xylose ABC transporter, substrate-binding protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAATCCG TTTTGAAACT GATGGCAGTG GCTGCCGTCA TGACGTCCGC CTATGGTCCT
GTTCATGCCA AGGATCTGGT GGTTGGCGTG TCCTGGTCCA ACTTCCAGGA AGAGCGCTGG
AAGACCGATG AGGCCGCCAT CAAGGAAGCA CTGAAGGCGC ATGGTGCAAA GTATATTTCC
GCCGACGCCC AGACATCCGC CGCCAAGCAG TTGACCGATA TCGAAAGCCT GATCGCGCAG
GGTGCCAATG CGCTGATCGT GCTGGCGCAG GATTCGAGCG CCATTGGCCC GGCCATCGAA
AAGGCTGCGG CGGAAGGCAT TCCTGTCATC GGCTACGACC GCCTGATTGA GAACCCCAAC
ACCTATTACA TCACGTTCGA CAACAAGGAA GTCGGCCGCT TGCAGGCCAA GGAAGTGATG
AAGGTCAAGC CCACAGGCAA TTACGTGTTC ATCAAGGGTG GCTCGACCGA CCCGAACGCC
GATTTCGTGT TTTCCGGCCA GATGGAAGTG CTGAAGGATG CCATGGCCAG CGGCAAGATC
AAGAATGTTG GCGAAGCCTA TACCGATGGC TGGAAGCCGG AAATTGCCCA GAAGAACATG
GAGCAGTTTT TGACCGCCAA CAACAACAAG GTCGATGCGG TCGTCTCGTC CAATGACGGC
ATGGCGGGCG GCGTTGTCGC AGCGCTGGAA GCACAGGGGC TTGCCGGTTC CGTGCCCGTT
TCCGGCCAGG ATGGCGACAA GGCAGCGTTG AACCGCGTCG CACTCGGCAC CCAGACCGTC
TCCGTCTGGA AAGACAGCCG CTTGCTGGGC AAGAAAGCCG GTGACGTGGC CGTGGCGCTG
GCCAGTGGCA AGAAGATGAG CGAAATCCCC GGCACTGCCA AATTCAAGGG CGGCACCAAG
GGCGTGGAAA TGGAATCGCA ATTCCTGATG CCGCAGGCCA TCACCAAGGA CAATCTCAAC
GTTGTTCTGG ATGCCAAGTG GATCGACAAG AAGACGCTGT GCCAGGGTGT GAAAGCTGGC
GCGGTTGAGG TGTGCAAGTA A
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| Protein sequence | MKSVLKLMAV AAVMTSAYGP VHAKDLVVGV SWSNFQEERW KTDEAAIKEA LKAHGAKYIS
ADAQTSAAKQ LTDIESLIAQ GANALIVLAQ DSSAIGPAIE KAAAEGIPVI GYDRLIENPN
TYYITFDNKE VGRLQAKEVM KVKPTGNYVF IKGGSTDPNA DFVFSGQMEV LKDAMASGKI
KNVGEAYTDG WKPEIAQKNM EQFLTANNNK VDAVVSSNDG MAGGVVAALE AQGLAGSVPV
SGQDGDKAAL NRVALGTQTV SVWKDSRLLG KKAGDVAVAL ASGKKMSEIP GTAKFKGGTK
GVEMESQFLM PQAITKDNLN VVLDAKWIDK KTLCQGVKAG AVEVCK
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