Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_1210 |
Symbol | |
ID | 7387602 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | - |
Start bp | 1025330 |
End bp | 1026115 |
Gene Length | 786 bp |
Protein Length | 261 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 643650663 |
Product | ABC transporter |
Protein accession | YP_002548869 |
Protein GI | 222147912 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1129] ABC-type sugar transport system, ATPase component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.986169 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACACAAC AGAACACGCC TCTTGTGGAA ATGAAGAATA TTTCCATCTC CTTCGGCGGT ATTCATGCCG TCGATGATGC CTCGGTGGAT CTTCATGCCG GTGAGGTGGT CGCCCTGCTC GGCCATAACG GTGCGGGCAA ATCGACGCTG ATCAAGATCC TGTCGGGCGC CTACAAGCGC GATGGTGGCG AAATCCTGAT CAATGGCGAA CCGGCCGAGA TCAACAATCC GCGCGATGCC AAGCGCTACG GCATCGAGAC GATCTACCAG ACGCTGGCCG TCGCCGACAA TGTCGATGCC GCCGCCAATC TCTATCTCGG CCGCGAGCTG CGCACCCCCT GGGGCACGCT GGATGATGTG GCGATGGAGG CGAAGGCCCG CGAGGTGATG GGCCGGCTCA ACCCGAATTT CCAGCGCTTC AAGGAGCCGG TGAAAGCCTT GTCAGGCGGC CAGAGGCAAT CGGTGGCCAT TGCCCGCGCC ATCCTGTTTG ATGCCCGCAT CCTGATCATG GATGAGCCGA CCGCAGCGCT CGGTCCTCAG GAAACCGCCC AGGTGGGCGA GCTGATCCTG CAACTGAAAA AGGAAGGCAT CGGCATTTTC CTGATCAGCC ACGACATTCA CGATGTCTTC GATCTCGCCG ACCGGGTGTT TGTGATGAAA AACGGCAAGG TGGTCGGCCA TGCCCGCACA GGGGATGTTA CCAAGGACGA GGTGCTGGGC ATGATCATCA TGGGCAAAGT GCCGCCGGGT GCCGTGCCTG GCCCCGGCGC GATGCAGGTG GTTTGA
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Protein sequence | MTQQNTPLVE MKNISISFGG IHAVDDASVD LHAGEVVALL GHNGAGKSTL IKILSGAYKR DGGEILINGE PAEINNPRDA KRYGIETIYQ TLAVADNVDA AANLYLGREL RTPWGTLDDV AMEAKAREVM GRLNPNFQRF KEPVKALSGG QRQSVAIARA ILFDARILIM DEPTAALGPQ ETAQVGELIL QLKKEGIGIF LISHDIHDVF DLADRVFVMK NGKVVGHART GDVTKDEVLG MIIMGKVPPG AVPGPGAMQV V
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