Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_1177 |
Symbol | |
ID | 7386233 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 996724 |
End bp | 998286 |
Gene Length | 1563 bp |
Protein Length | 520 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 643650639 |
Product | MFS permease |
Protein accession | YP_002548845 |
Protein GI | 222147888 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGATACCG CCTTGTCCGA TCCGGCCGCC GCTCCCAAGA CGGTGGCGCC GCCGCCGTTT CAGTCGCTGG TCCCGGACCC GCGCCTGCGG ATGATGCTGT TTCTGTTTCT GATGACGGCG CTGTTCATGG CGACGCTGGA CAATCAGATC GTTTCCACGG CATTGCCGAC CATCGTTGGC GAGTTCGGGC AGTTGGAGCG GTTCGGGTGG GTGGGGTCCG CCTATCTTCT GGCCACCAGC GCGGTCATGC CGCTCTATGG CAAACTGGGG GATCTATTTG GCCGTAAATA TGTGATGATG ACGGCCATCG CGATTTTTAC CGTTGGCTCG CTGATTTGCG GCTCGGCCGT TTCGATGAAC ACGTTGATTG CTGCACGGGT GCTGCAAGGG CTTGGCGGTG GCGGCATCAT GGTGTCGATC TTTTCCGTCA ATGCCGACCT GTTCGAGCCA CGGGTGCGGG CCCGTTATCA GAGCTATTCC AGCCTGGTGC TGATGGCATC AGGCGCGGTC GGCCCCACAT TGGGCGGCAC GATGAGCGAC CTGTTCGGCT GGCGGTCAAT CTTTCTCGTC AACCTGCCGA TTGGCATTCT GGTGCTGGTC GGTCTTGGCC TTTATCTGCC CTATCGCAAG CCGCATCGCC GTCCGAAGAT CGATTATGCC GGTGCGCTGC TGCTGGCCTG CGCCGTGACC AGCGTGGTGT TCTGGGCCGA TAGCGGCCAG ATTTTCGGTT CACTGGTGGC ACCGGGAAGC CTCGGCGTCG TTGCCTTCGG CTTGGTCTGT GCTGTGCTGT TCGTGCAGGT GGAAAAGCGG GCCGCAGAAC CCATGGTGCC GATCAGCCTG ATGCGCAATT CCACCGCCCG GCTGTTGTGG ATCATATCAC TGGCCAGCGG TGCTGTCGGC ATCGGTTCGG TCAATTACGT TGCGCTCTAT CTGCAAACCA CCACCGGGCT GTCGCCGACG CTGGCTGGTC TGTTGTTCAT TGCGGTCACC GGTGGCATCG CCATCGGTTC GCTTAGCAGC GGACGGCTGA TTTCCTCGAC AGGTCGCTAC AAGATTTTCG GTATCATCGG CGGCGCGGGC AGCTGCATTG CCTTTATCCT GTTCAGTCAA TTGCCGGTTG GCACGCCGAT CGCGGTGATT GGCGTGCTGA TGCTGATGCA TGGCATCAGC GTCGGTATCG GCCAGCAGAT CCCGGTGATT GGCGTGCAGA ATGCCGTGGC CCAGAAGGAT GTCGGGGCGG CGACCGGCAC GGTGACGCTG ACCCGCATGG GCGGTGCCTC CATCGCCATT TCCATCTATG GTGCGGTGCT ATCGGCCTTC ATGACTGGCG GTGCAGCAAT CCCTGGCGTC AGTAATATCG AAAGCCTGAC ACCGGCGGCC ATTGCGGCGC TGGACCCGGC AGCCCGCGCA GCGGTCTCGG CCACCTATGC TCATGCGTTC GGGCCGGTAT TCATCAGCAT GGCGCTGATC ATTGGCTGCG GCTTCATCGC GTCCTGCTGC CTGAAGAATG TCCGGTTGCC GACCGGCGGG GCCCCGAAAC CGGTGGAGGC CGTGGCGGAG TGA
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Protein sequence | MDTALSDPAA APKTVAPPPF QSLVPDPRLR MMLFLFLMTA LFMATLDNQI VSTALPTIVG EFGQLERFGW VGSAYLLATS AVMPLYGKLG DLFGRKYVMM TAIAIFTVGS LICGSAVSMN TLIAARVLQG LGGGGIMVSI FSVNADLFEP RVRARYQSYS SLVLMASGAV GPTLGGTMSD LFGWRSIFLV NLPIGILVLV GLGLYLPYRK PHRRPKIDYA GALLLACAVT SVVFWADSGQ IFGSLVAPGS LGVVAFGLVC AVLFVQVEKR AAEPMVPISL MRNSTARLLW IISLASGAVG IGSVNYVALY LQTTTGLSPT LAGLLFIAVT GGIAIGSLSS GRLISSTGRY KIFGIIGGAG SCIAFILFSQ LPVGTPIAVI GVLMLMHGIS VGIGQQIPVI GVQNAVAQKD VGAATGTVTL TRMGGASIAI SIYGAVLSAF MTGGAAIPGV SNIESLTPAA IAALDPAARA AVSATYAHAF GPVFISMALI IGCGFIASCC LKNVRLPTGG APKPVEAVAE
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