| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1177 |
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| Symbol | |
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| ID | 7386233 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 996724 |
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| End bp | 998286 |
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| Gene Length | 1563 bp |
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| Protein Length | 520 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 643650639 |
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| Product | MFS permease |
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| Protein accession | YP_002548845 |
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| Protein GI | 222147888 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATACCG CCTTGTCCGA TCCGGCCGCC GCTCCCAAGA CGGTGGCGCC GCCGCCGTTT
CAGTCGCTGG TCCCGGACCC GCGCCTGCGG ATGATGCTGT TTCTGTTTCT GATGACGGCG
CTGTTCATGG CGACGCTGGA CAATCAGATC GTTTCCACGG CATTGCCGAC CATCGTTGGC
GAGTTCGGGC AGTTGGAGCG GTTCGGGTGG GTGGGGTCCG CCTATCTTCT GGCCACCAGC
GCGGTCATGC CGCTCTATGG CAAACTGGGG GATCTATTTG GCCGTAAATA TGTGATGATG
ACGGCCATCG CGATTTTTAC CGTTGGCTCG CTGATTTGCG GCTCGGCCGT TTCGATGAAC
ACGTTGATTG CTGCACGGGT GCTGCAAGGG CTTGGCGGTG GCGGCATCAT GGTGTCGATC
TTTTCCGTCA ATGCCGACCT GTTCGAGCCA CGGGTGCGGG CCCGTTATCA GAGCTATTCC
AGCCTGGTGC TGATGGCATC AGGCGCGGTC GGCCCCACAT TGGGCGGCAC GATGAGCGAC
CTGTTCGGCT GGCGGTCAAT CTTTCTCGTC AACCTGCCGA TTGGCATTCT GGTGCTGGTC
GGTCTTGGCC TTTATCTGCC CTATCGCAAG CCGCATCGCC GTCCGAAGAT CGATTATGCC
GGTGCGCTGC TGCTGGCCTG CGCCGTGACC AGCGTGGTGT TCTGGGCCGA TAGCGGCCAG
ATTTTCGGTT CACTGGTGGC ACCGGGAAGC CTCGGCGTCG TTGCCTTCGG CTTGGTCTGT
GCTGTGCTGT TCGTGCAGGT GGAAAAGCGG GCCGCAGAAC CCATGGTGCC GATCAGCCTG
ATGCGCAATT CCACCGCCCG GCTGTTGTGG ATCATATCAC TGGCCAGCGG TGCTGTCGGC
ATCGGTTCGG TCAATTACGT TGCGCTCTAT CTGCAAACCA CCACCGGGCT GTCGCCGACG
CTGGCTGGTC TGTTGTTCAT TGCGGTCACC GGTGGCATCG CCATCGGTTC GCTTAGCAGC
GGACGGCTGA TTTCCTCGAC AGGTCGCTAC AAGATTTTCG GTATCATCGG CGGCGCGGGC
AGCTGCATTG CCTTTATCCT GTTCAGTCAA TTGCCGGTTG GCACGCCGAT CGCGGTGATT
GGCGTGCTGA TGCTGATGCA TGGCATCAGC GTCGGTATCG GCCAGCAGAT CCCGGTGATT
GGCGTGCAGA ATGCCGTGGC CCAGAAGGAT GTCGGGGCGG CGACCGGCAC GGTGACGCTG
ACCCGCATGG GCGGTGCCTC CATCGCCATT TCCATCTATG GTGCGGTGCT ATCGGCCTTC
ATGACTGGCG GTGCAGCAAT CCCTGGCGTC AGTAATATCG AAAGCCTGAC ACCGGCGGCC
ATTGCGGCGC TGGACCCGGC AGCCCGCGCA GCGGTCTCGG CCACCTATGC TCATGCGTTC
GGGCCGGTAT TCATCAGCAT GGCGCTGATC ATTGGCTGCG GCTTCATCGC GTCCTGCTGC
CTGAAGAATG TCCGGTTGCC GACCGGCGGG GCCCCGAAAC CGGTGGAGGC CGTGGCGGAG
TGA
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| Protein sequence | MDTALSDPAA APKTVAPPPF QSLVPDPRLR MMLFLFLMTA LFMATLDNQI VSTALPTIVG
EFGQLERFGW VGSAYLLATS AVMPLYGKLG DLFGRKYVMM TAIAIFTVGS LICGSAVSMN
TLIAARVLQG LGGGGIMVSI FSVNADLFEP RVRARYQSYS SLVLMASGAV GPTLGGTMSD
LFGWRSIFLV NLPIGILVLV GLGLYLPYRK PHRRPKIDYA GALLLACAVT SVVFWADSGQ
IFGSLVAPGS LGVVAFGLVC AVLFVQVEKR AAEPMVPISL MRNSTARLLW IISLASGAVG
IGSVNYVALY LQTTTGLSPT LAGLLFIAVT GGIAIGSLSS GRLISSTGRY KIFGIIGGAG
SCIAFILFSQ LPVGTPIAVI GVLMLMHGIS VGIGQQIPVI GVQNAVAQKD VGAATGTVTL
TRMGGASIAI SIYGAVLSAF MTGGAAIPGV SNIESLTPAA IAALDPAARA AVSATYAHAF
GPVFISMALI IGCGFIASCC LKNVRLPTGG APKPVEAVAE
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