| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0943 |
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| Symbol | ispB |
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| ID | 7387732 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 793433 |
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| End bp | 794449 |
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| Gene Length | 1017 bp |
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| Protein Length | 338 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 643650460 |
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| Product | octaprenyl-diphosphate synthase |
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| Protein accession | YP_002548668 |
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| Protein GI | 222147711 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0142] Geranylgeranyl pyrophosphate synthase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.560813 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGGGCGCAG TGATACCGCT TGGTGACAAG AAAAACAAAC AGGCCTCGGT GCAACCTCTG
GTGGACCTGA CCCGCAACGG CATGGAGCGG GTCAATCAAC TGATCCTGTC CAAGGCAGGC
TCCGATGTCC AGATGATCCC GGAAGTGGCC AATCACCTGA TTTCCTCTGG TGGCAAGCGC
CTGCGCCCAA TGCTGACGCT GGCCTCCGCC GCGATGTTTG GCTATGAGGG CGAAGGCCAT
ATCAAGCTCG CCACCAGCGT CGAATTCATG CACACTGCCA CGCTGCTGCA TGACGATGTG
GTGGATGAGA GCGACCTCAG GCGCGGCAAA TCCACCGCCC GGATGATCTG GGGCAACCAG
GCCAGCGTGT TGGTCGGCGA TTTCCTGCTT GGCCAGGCAT TTCGAATGAT GGTCGAAGTC
GGCTCGCTGG AAGCGCTGGA TGTCTTGTCA ACGGCGGCCT CGGTGATTGC CGAGGGCGAA
GTGCTTCAGC TTTCGGTCGC CAAGAACATG GAAACCACCG AGGACGATTA TCAGGCGGTC
ATTCGTGCCA AGACGGCGGC GCTGTTTGCC GCCGCCGCCG AAGTCGGCCC TATCGTGGCG
GGAACGGACA AGGCAGCCCG CAACGCGCTC AAATCCTACG GCATGAATTT GGGCCTGGCC
TTCCAGCTGG TCGATGACGC CCTGGATTAC GGCGGCAAGG TCGCCGATCT CGGCAAGAAT
ACCGGAGACG ATTTCCGCGA GGGCAAGATC ACCCTGCCAG TCATTCTCGC CTACCGGCGC
GGCAACGAGG CCGAGCGGGG CTTCTGGCGC GAAGCGCTGG AAGGCGGCAG GCATGACGAT
GCCAATCTGG AAAAGGCCAT GGGGCTGATT ACCAAATATA ACGGTCTTTC CGATACAGTG
GCGCGGGCCA TTCACTATGG CGACGTCGCC CGCGATGCCC TGGCGCCGGT GCCTGACGGC
GTCTGGAAAG ATGCCTTGAT GGACGTGATC GATTTCTGCA TCGAACGGGT CAGTTAA
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| Protein sequence | MGAVIPLGDK KNKQASVQPL VDLTRNGMER VNQLILSKAG SDVQMIPEVA NHLISSGGKR
LRPMLTLASA AMFGYEGEGH IKLATSVEFM HTATLLHDDV VDESDLRRGK STARMIWGNQ
ASVLVGDFLL GQAFRMMVEV GSLEALDVLS TAASVIAEGE VLQLSVAKNM ETTEDDYQAV
IRAKTAALFA AAAEVGPIVA GTDKAARNAL KSYGMNLGLA FQLVDDALDY GGKVADLGKN
TGDDFREGKI TLPVILAYRR GNEAERGFWR EALEGGRHDD ANLEKAMGLI TKYNGLSDTV
ARAIHYGDVA RDALAPVPDG VWKDALMDVI DFCIERVS
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