Gene Avi_0833 details

Gene Information

• Locus tag: Avi_0833
• ID: 7386313
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 715805
• End bp: 716425
• Gene Length: 621 bp
• Protein Length: 206 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 643650385
• Product: ABC-type uncharacterized transport system, periplasmic component related protein
• Protein accession: YP_002548594
• Protein GI: 222147637
• COG category: [R] General function prediction only
• COG ID: [COG3683] ABC-type uncharacterized transport system, periplasmic component

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.279263
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCCGTT TGCCACTTGC CTTTCGCCGG AAGACCGCGC TTGCAGCCAC GCTGGCGCTC 
TGTCTGCTGT CGGCTTCTCC GGTGTTGGCG CATCCAGACA TCGCCATCAC GCTGAGGGTG 
CTGTTCGATA TGCATCATGG GGTGTTGACG GGGGTCGGTG AAAGCTGGTC CTTCGATGCG 
GCCTATAGCC GCGTTCTGCT GGATCGCTAT GACCGCGACC GCAATAGCCA GTTTACCGCG 
GAGGAGGCCT CGGCCCTGCG CGACAAGCTG ATTGCCGATC TTGGCCGCAA GAGGTTTTTC 
ACGGAATTGT CGGTGGATGG CAGGCAGGCG GCGCGGTTGC AGCCGGTGGG CTTTACCGCT 
GAGATCCATG GGAATGTCGT GACTGTCACC TTTGCTTTCA GCCTGGCCGG ACCGGTGGAT 
CTGCGCGGCA AAAGCCTTGA TCTGGAGGTC AAGGACAAGG ACTATGTCGC CGCGTTCCGT 
CTGGCCGAGA CCGGTGGGCT TCAGACTCGC GGCGATGGTG GCCAGTGCCG GACCAGCCGC 
GCACCAAACC CGGCCCATGC CTATTTCGCC GGTCTGGTCG TGCCGGAGCG GATAACCTTG 
ACCTGCGGTC CGTCTTTATG A 

 

Protein sequence

MSRLPLAFRR KTALAATLAL CLLSASPVLA HPDIAITLRV LFDMHHGVLT GVGESWSFDA 
AYSRVLLDRY DRDRNSQFTA EEASALRDKL IADLGRKRFF TELSVDGRQA ARLQPVGFTA 
EIHGNVVTVT FAFSLAGPVD LRGKSLDLEV KDKDYVAAFR LAETGGLQTR GDGGQCRTSR 
APNPAHAYFA GLVVPERITL TCGPSL