Gene Avi_0546 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_0546 
Symbol 
ID7387996 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand- 
Start bp465548 
End bp466264 
Gene Length717 bp 
Protein Length238 aa 
Translation table11 
GC content55% 
IMG OID643650181 
Producttransposase 
Protein accessionYP_002548393 
Protein GI222147436 
COG category[L] Replication, recombination and repair 
COG ID[COG3316] Transposase and inactivated derivatives 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCAGAT CTAGCCGTGA TCCTCTTTAT CGTCGCCACC GATTTCCAGC GGAAGTGATT 
GCCCATGCAG TTTGGCTGCA TTTCCGGTTT CCGCTTAGCC TGCGGATGGT CGAGGATCTG 
CTGGCAGTGC GTGGCATCAT CGTCTCTCAT CAAACCGTGC GGCTCTGGGC TGAGAAATTC 
GGCAGACACT TTGCCAACGA TATCCGCAAG CGATCTGCCG GCAGGCTCGG TGATAAATGG 
TATCTCGATG AGGTTGTCAT CACCATCGGT GGAAGGAAAC ACTGGCTTTG GCGCGCCGTT 
GATCAGGATG GCTTTGTTCT CGACGTGCTG GTGCAAAACC GCCGCAATGC CAAGGCGGCA 
AAACGTTTGA TGCGCAAGCT CCTGAAAGCC CAAGGCCGTG CGCCGTGTTT GATGATTAAC 
GACAAACTAC TATCCTATGG TGCAGCAAAG CGGGAGGTCA TGCCCGGCGT TGAGCATCGT 
TCTCACAAGG GATTGAACAA TCGGGCGGAA AACTCTCATC AGCCCGTCCG ACGACGCGAG 
AAGATCATGA AGCGCTTCAA GTCAGCACGA CATCTTCAGC GTTTCGTTTC CATCCATGAC 
CCCATCGCCA ACCTCTTTAA CGTTCCCCGA CACGATATCC CATCCGCCCA CCATCGCGAA 
CTGCGAACCG AAGCCATGCA AGCATGGCAC CAAATCGCAC GCCTTCACGC CGCATGA
 
Protein sequence
MTRSSRDPLY RRHRFPAEVI AHAVWLHFRF PLSLRMVEDL LAVRGIIVSH QTVRLWAEKF 
GRHFANDIRK RSAGRLGDKW YLDEVVITIG GRKHWLWRAV DQDGFVLDVL VQNRRNAKAA 
KRLMRKLLKA QGRAPCLMIN DKLLSYGAAK REVMPGVEHR SHKGLNNRAE NSHQPVRRRE 
KIMKRFKSAR HLQRFVSIHD PIANLFNVPR HDIPSAHHRE LRTEAMQAWH QIARLHAA