Gene Avi_0503 details

Gene Information

• Locus tag: Avi_0503
• ID: 7388497
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 424535
• End bp: 425212
• Gene Length: 678 bp
• Protein Length: 225 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 643650143
• Product: ABC transporter
• Protein accession: YP_002548356
• Protein GI: 222147399
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG1174] ABC-type proline/glycine betaine transport systems, permease component

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATCGACT GGTTTTCAAA TCCCGCCCAT TGGACCGGAG ACGGTGGCGT TATTGCTCTG 
GTCATCCAGC ATCTGGCCTA TAGCGGCGCC GCACTTTTGC TGGCCTGCCT GATCGGCTTG 
CCCGTCGGGC TTTATGTCGG ACATACCGGG CGCGGCGTGG TGTTCATCGC CGGTCTCGCC 
AATGCGTTGC GATCCCTTCC GAGCCTTGGC CTTATTGTTC TCCTGGTGAT CCTGTTCGGC 
CCCGTCTTCT CGTCCGACAT GGCGTTTATC GTGCCGAGCC TCATCGTGCT GGTGCTTCTG 
GCTGTACCGC CGATCATGAC CGGCAGCTAT GCCGGTATCG CGGCGGTGGA CCCGGCGGCG 
GTCGATGCGG CGCGCGGCAT GGGTAAGTGC CCGCTTGATA TCCTGTTTGA TGTCGAACTG 
CCTTGCGCGC TGCCGTTGAT TTTTTCCGGC CTGCGCAGTG CAACGCTTCA GATCATCTCA 
ACTGCAACGA TTGCCGCTTA TGTCTCCCTT GGCGGCTTGG GGCGTCTTAT TATCGATGGC 
CGGGCGCAAC ACGATTATTA CCAGATGGCG GCAGGCGCTG TTCTTGTCGG TGCGCTTGCG 
CTGACGGTCG ATCTTTTGAT CGGCGTCATA TCGAGGTTCA CGGTCTCGCC CGGACTGACG 
CGCCGCCTGA AACGGTAG 

 

Protein sequence

MIDWFSNPAH WTGDGGVIAL VIQHLAYSGA ALLLACLIGL PVGLYVGHTG RGVVFIAGLA 
NALRSLPSLG LIVLLVILFG PVFSSDMAFI VPSLIVLVLL AVPPIMTGSY AGIAAVDPAA 
VDAARGMGKC PLDILFDVEL PCALPLIFSG LRSATLQIIS TATIAAYVSL GGLGRLIIDG 
RAQHDYYQMA AGAVLVGALA LTVDLLIGVI SRFTVSPGLT RRLKR