| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0427 |
|---|
| Symbol | trpS |
|---|
| ID | 7388442 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 366815 |
|---|
| End bp | 367879 |
|---|
| Gene Length | 1065 bp |
|---|
| Protein Length | 354 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 643650086 |
|---|
| Product | tryptophanyl-tRNA synthetase |
|---|
| Protein accession | YP_002548301 |
|---|
| Protein GI | 222147344 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0180] Tryptophanyl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00233] tryptophanyl-tRNA synthetase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.522536 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGAAT TTCAGCCGCT GGTTTTTTCC GGCGTTCAGC CCACCGGCAA TCTCCATCTT
GGCAATTACC TCGGCGCGAT CCGCAAATTC GTCGCGCTCC AGGAGAATAA CGATTGCATG
TATTGCGTCG TTGATCTGCA TGCGCTGACG GCGCAGCTGG TGCATGAGGA TATGCGCGGC
CAGATCCGCT CGATCACGGC GGCTTTTCTC GCGGCGGGTA TCGACCCGGT CAAGCATATC
GTTTTCAACC AGAGCCAGGT GCCACAACAT GCCGAACTGG CCTGGATCTT CAACTGTGTC
GCCCGCATCG GCTGGATGAA CCGGATGACC CAGTTCAAGG ACAAGGCCGG CAAGGACCGC
GAGCAGGCTT CGCTTGGCCT GTTTGCCTAT CCGAGCCTGA TGGCTGCGGA CATCCTGGTC
TACCGCGCCA CCCATGTGCC TGTGGGCGAT GACCAGAAGC AGCATCTGGA ACTGACCCGC
GATATCGCCA TGAAGTTCAA CCTGGATTTT GCCCAGCAGA TCCGCCCAAC CGGACTTGGC
ATCGATATCA CTGTCGGCAA CGAACCGGTG CATGCCTATT TCCCGATGGT CGAACCGCTG
ATCGACGGTC CGGCCCCCAG GGTGATGAGC CTGAAGGATG GCACCAAGAA AATGTCGAAG
TCCGATCCTT CGGATCTGTC GCGCATCAAC CTGATGGACG ATGCCGAGGC GATTGCCAAG
AAGATCCGCA AGGCCAAGAC CGATCCGGAC GCCTTGCCAA GCGAAACGGA TGGACTGGCC
GGACGGCCGG AGGCCGATAA TCTGGTTGGC ATTTATGCAG CCCTTGCCGA CAAGACCAAA
GCCGAGGTGC TGGCGGAATT CGGCGGGCAG CAGTTCTCGG TGTTCAAGCC TGCTCTTATC
GAACTTGCTG TCGAGGTTCT GTCGCCGATC ACTGGCGAAA TGCGCCGTTT GATGGGGGAT
CCTGCTCATA TCGACGCCGT GTTGCGGGAC GGTGGTGAGC GGGCGCGGGT CCGTGCTGAA
AAAACCATGA CGGAAATCCG CGACATTATT GGTTTCGTGC GCTAA
|
|---|
| Protein sequence | MSEFQPLVFS GVQPTGNLHL GNYLGAIRKF VALQENNDCM YCVVDLHALT AQLVHEDMRG
QIRSITAAFL AAGIDPVKHI VFNQSQVPQH AELAWIFNCV ARIGWMNRMT QFKDKAGKDR
EQASLGLFAY PSLMAADILV YRATHVPVGD DQKQHLELTR DIAMKFNLDF AQQIRPTGLG
IDITVGNEPV HAYFPMVEPL IDGPAPRVMS LKDGTKKMSK SDPSDLSRIN LMDDAEAIAK
KIRKAKTDPD ALPSETDGLA GRPEADNLVG IYAALADKTK AEVLAEFGGQ QFSVFKPALI
ELAVEVLSPI TGEMRRLMGD PAHIDAVLRD GGERARVRAE KTMTEIRDII GFVR
|
|---|
| |