| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0275 |
|---|
| Symbol | phnL |
|---|
| ID | 7387576 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 236468 |
|---|
| End bp | 237196 |
|---|
| Gene Length | 729 bp |
|---|
| Protein Length | 242 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 643649966 |
|---|
| Product | phosphonate C-P lyase system protein PhnL |
|---|
| Protein accession | YP_002548181 |
|---|
| Protein GI | 222147224 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4778] ABC-type phosphonate transport system, ATPase component |
|---|
| TIGRFAM ID | [TIGR02324] phosphonate C-P lyase system protein PhnL |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.994335 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCACAC CTCTTATCGT TTCCGATGTT GCCAAAAGCT TCACCATGCA TCTGCGCGAC
GGGCTTGTCT TGCCGGTGGT GCGCAATGTC AGCTTTTCCG TCAACAGTGG CTCCTGCTCC
GTGCTGGGCG GTCCGTCCGG CATTGGCAAA AGCTCAATCC TGAAAATGCT CTACGGCAAT
TACGCCGTCG ATAGCGGCCA GATCCTGGTG CGCCATCACG ATACGGTGGT GGATCTGGCG
TCCGCCATGC CGCGCATGGT GCTGGATATC CGCCGCGATA CGATGGGCTA TGTCAGCCAG
TTCCTGCGCA CGGTTCCAAG GGTGTCGGCG CTGGATGTCG TGGCCCAACC GCTGACGGCG
CGCGGTGTGG GTATCGACGA GGCAAGATCG GTGGCAAGTG ATCTGCTGGC TAGACTGAAC
CTGCCCAAGG CACTCTGGCA ATTGCCGCCC GCCACCTTTT CCGGCGGCGA GCAGCAGCGT
GTCAACATCG CCCGCGGCTT CATCACCGAC CATAAAATCC TGCTGTTGGA TGAGCCGACG
GCCTCGCTCG ACGCGCAAAA TCGTGCCGTG GTCATCGAGT TGATTGCTGG CAAAAAGGCT
GAGGGCGTCG CCATGCTCGG CATTTTCCAC GACGAGGAAG TGCGCGAAGC GGTTGCCGAC
ACCATTCTCG ATGTCTCGCA ATTCTCACCT AGAGGCCGTC AGGTTCAGAT TGAACCAGCC
ATCCTCTAG
|
|---|
| Protein sequence | MPTPLIVSDV AKSFTMHLRD GLVLPVVRNV SFSVNSGSCS VLGGPSGIGK SSILKMLYGN
YAVDSGQILV RHHDTVVDLA SAMPRMVLDI RRDTMGYVSQ FLRTVPRVSA LDVVAQPLTA
RGVGIDEARS VASDLLARLN LPKALWQLPP ATFSGGEQQR VNIARGFITD HKILLLDEPT
ASLDAQNRAV VIELIAGKKA EGVAMLGIFH DEEVREAVAD TILDVSQFSP RGRQVQIEPA
IL
|
|---|
| |