| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0194 |
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| Symbol | rpsA |
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| ID | 7387516 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 174545 |
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| End bp | 176266 |
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| Gene Length | 1722 bp |
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| Protein Length | 573 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 643649904 |
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| Product | 30S ribosomal protein S1 |
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| Protein accession | YP_002548121 |
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| Protein GI | 222147164 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0539] Ribosomal protein S1 |
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| TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.571877 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGATTAG GAGATTTCAT GTCTGTTTCT ACCCCGACAC GGGACGATTT CGCGGCCCTG
CTGGAAGAAT CCTTCGCAAA GACCGATCTG GCCGAAGGCT ATGTTGCCAA GGGCATCGTT
ACGGCCATCG AGAAGGACGT CGCGATCGTT GACGTTGGCC TCAAGGTCGA AGGCCGCGTT
CCGCTGAAGG AATTTGGCGC CCGCGCCAAG GACGGCCAGC TGAAAGTTGG CGACGAAGTT
GAAGTTTACG TCGAGCGCAT TGAAAACGCG CTGGGCGAAG CTGTTCTGTC GCGCGAAAAG
GCCCGTCGCG AAGAAAGCTG GATCAAGCTC GAAGCCAAGT TCGAAGCTGG CGAGCGCGTC
GAAGGCGTTA TCTTCAACCA GGTCAAGGGT GGCTTCACCG TCGATCTGGA TGGTGCCGTT
GCCTTCTTGC CGCGCTCTCA GGTGGATATC CGCCCGATCC GCGACGTGAC CCCGCTGATG
CACAACCCGC AGCCCTTCGA AATCCTCAAG ATGGACAAGC GTCGCGGCAA CATCGTGGTT
TCGCGCCGTA CGGTTCTGGA AGAGTCCCGC GCCGAGCAGC GTTCTGAAAT CGTTCAGAAC
CTCGAAGAAG GCCAGGTTGT TGAAGGCGTC GTCAAGAACA TCACCGATTA CGGTGCGTTC
GTTGACCTCG GCGGCATCGA CGGCCTGCTG CATGTCACCG ACATGGCATG GCGTCGCGTG
AACCATCCTT CGGAAATCCT GTCCATCGGC CAGTCGGTCA AGGTTCAGAT CATCCGTATC
AACCAGGAAA CCCACCGTAT CTCGCTCGGC ATGAAGCAGC TCGAGTCGGA TCCTTGGGAT
GGCATTGCTG CCAAGTACCC GGTTGGCAAG AAGATCTCCG GTACTGTGAC CAACATCACC
GACTACGGTG CATTCGTTGA GCTGGAGCCG GGCATTGAAG GCCTGATCCA CATTTCCGAA
ATGTCCTGGA CCAAGAAGAA CGTACACCCC GGCAAGATCC TGTCCACAAG CCAGGAAGTT
GACGTGGTTG TTCTCGAAGT CGATCCGTCC AAGCGTCGTA TCTCGCTTGG CCTGAAGCAG
ACCCTCGAAA ACCCATGGCA GGCATTTGCC TACAGCCATC CGGCTGGCGC TGAAGTCGAA
GGCGAAGTCA AGAACAAGAC CGAATTCGGC CTGTTCATCG GCCTCGAAGG CGACGTTGAC
GGCATGGTTC ACCTGTCGGA TCTCGACTGG AACCGTCCAG GCGAGCAGGT CATCGAAGAA
TACAACAAGG GCGACGTCGT TCGCGCCGTT GTTCTCGATG TGGATGTCGA AAAGGAGCGT
ATCTCGCTCG GCATCAAGCA GCTCGGCAAG GACGCGGTTG GTGATGCCGC CGCTTCCGGC
GATCTGCGCA AGAATGCTGT TGTTTCCTGC GAAGTGATCG CGGTCAATGA CGGTGGCGTC
GAAGTCAAGC TCGTCAACCA TGAAGACATC GTGTCCTTCA TCCGCCGCGC CGACCTCGCT
CGTGACCGTG ATGACCAGCG CCCTGAGCGT TTCTCCGTTG GCCAGGTTTT TGACGCTCGC
GTCACCAACT TCTCCAAGAA GGATCGCAAG GTCATGCTGT CGATCAAGGC GCTGGAAATC
GCTGAAGAGA AGGAAGCAGT TGCTCAGTTC GGTTCGTCCG ATAGTGGCGC TTCGCTCGGC
GACATCCTGG GCGCAGCCCT GAAGAACCGC AGCAACGACT AA
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| Protein sequence | MRLGDFMSVS TPTRDDFAAL LEESFAKTDL AEGYVAKGIV TAIEKDVAIV DVGLKVEGRV
PLKEFGARAK DGQLKVGDEV EVYVERIENA LGEAVLSREK ARREESWIKL EAKFEAGERV
EGVIFNQVKG GFTVDLDGAV AFLPRSQVDI RPIRDVTPLM HNPQPFEILK MDKRRGNIVV
SRRTVLEESR AEQRSEIVQN LEEGQVVEGV VKNITDYGAF VDLGGIDGLL HVTDMAWRRV
NHPSEILSIG QSVKVQIIRI NQETHRISLG MKQLESDPWD GIAAKYPVGK KISGTVTNIT
DYGAFVELEP GIEGLIHISE MSWTKKNVHP GKILSTSQEV DVVVLEVDPS KRRISLGLKQ
TLENPWQAFA YSHPAGAEVE GEVKNKTEFG LFIGLEGDVD GMVHLSDLDW NRPGEQVIEE
YNKGDVVRAV VLDVDVEKER ISLGIKQLGK DAVGDAAASG DLRKNAVVSC EVIAVNDGGV
EVKLVNHEDI VSFIRRADLA RDRDDQRPER FSVGQVFDAR VTNFSKKDRK VMLSIKALEI
AEEKEAVAQF GSSDSGASLG DILGAALKNR SND
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