Gene Avi_0120 details

Gene Information

• Locus tag: Avi_0120
• Symbol: rnd
• ID: 7388297
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: -
• Start bp: 112465
• End bp: 113091
• Gene Length: 627 bp
• Protein Length: 208 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 643649853
• Product: ribonuclease D
• Protein accession: YP_002548071
• Protein GI: 222147114
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0349] Ribonuclease D

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.818192
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCTTCCA CCATTCGCTA CCATGAAGGT GATATCAGCA GCGAAGACGC GGCGCGCTAT 
ACCCGCGCCA TCGCCATCGA CACCGAAACG CTGGGGCTTA TCCCCCGCCG CGACCGGCTC 
TGCGTGGTGC AGCTTTCGCC GGGTGACGGC ACAGCCGACG TCATTCGCAT TGCGCCGGGC 
CAGCGCCAGG CGCCCAACCT GACCGCCCTG CTGGAAGACC CGACCCGGGA AAAAATCTTC 
CATTATGGCC GGTTCGACAT CGCCGTGCTG TTCCATACGT TTGGTGTCAC CACCACGCCG 
GTGTTCTGCA CGAAGATCGC CTCGCGTCTG TCGCGCACCT ATACCGACCG GCATGGACTA 
AAGGACAACC TCAAGGAAAT GCTGGATGTG GATGTGTCCA AGGCCCAGCA ATCCTCCGAC 
TGGGCGGCAG AAACGCTGTC TCCGGCGCAG CTCGAATATG CCGCCTCCGA CGTGCTCTAT 
CTGCATGCGC TGCGCGACAA GCTAACCGCC CGGCTGGTGC GCGATGGCCG CATGGACCAC 
GCCACCGCCT GCTTCGAGTT CCTGCCGACC CGGGCCAAAC TGGACCTGCT GGGCTGGGAA 
GAGACCGATA TTTTCGCCCA TAGCTGA 

 

Protein sequence

MASTIRYHEG DISSEDAARY TRAIAIDTET LGLIPRRDRL CVVQLSPGDG TADVIRIAPG 
QRQAPNLTAL LEDPTREKIF HYGRFDIAVL FHTFGVTTTP VFCTKIASRL SRTYTDRHGL 
KDNLKEMLDV DVSKAQQSSD WAAETLSPAQ LEYAASDVLY LHALRDKLTA RLVRDGRMDH 
ATACFEFLPT RAKLDLLGWE ETDIFAHS