Gene Ava_3421 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAva_3421 
Symbol 
ID3679947 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnabaena variabilis ATCC 29413 
KingdomBacteria 
Replicon accessionNC_007413 
Strand
Start bp4251795 
End bp4252619 
Gene Length825 bp 
Protein Length274 aa 
Translation table11 
GC content42% 
IMG OID637718773 
Productcondensin subunit ScpA 
Protein accessionYP_323923 
Protein GI75909627 
COG category[S] Function unknown 
COG ID[COG1354] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATGCTT CCGAGCTATT AGAAACGATC ACTCTCTTAA TTGAGCAAGC AGAACAAGGA 
GAAATAGATC CTTGGGATGT CAAAGTTATT GAGGTGATTG ACCGTTATTT AGAACTAATG
ACACCAAAGA CCACTGCCAG AGGTTATGAA TCTGACTTGT CTCAATCTGG ACAGGCTTTT
TTATCAGCCT CTATGCTGGT ATTATTCAAG GCCAATACCT TGATGCAATT ATCAACAGCA
GAAGATTTAG AAGATATTGA GGATAGTCTA TTAGCAGAGA ATGGAGATAG CTTATTCCAT
CAAACCCATC GTTTACCCTT AGAGCGAGTT TTACGACGGC GACCCGCCGC CATGCCCCCA
CCAAAACGCC GTGTCACTTT GCAAGAGTTG ATCGCCCAAT TGCAAATCAT GGCGAACCAA
CTCAAACTAG TACAAAAAGT TAGTAAACCG GAACGTCCCA AACGTCAACC TACTGTCAAA
GCTATGCGGG AAGCGCTAGA GTTAGCGCAC CAAGAAAATT TGACGGAGGT AGCTGGTGAA
TTGGAACAAG TATTGCATTT TTCGGCCCAA GAACTGTTGT TAGAACAAAA TTATTTAAAT
TTAGAACAAC TCGTACAATT GTGGACTCAG ACAAAGCAAT CACACCAATT ATCAGCCCAT
GAATCGGTAA ACAGTGACCT AGTTAGCGTG TTCTGGGCTT TATTGCTATT ATCGGCACAA
TCTAAGGTAG AGCTAGTTCA GGAGGAATTT TATCAAGAGG TGAGAATCCG CTTGCTTTCA
GATTCAGTAA ACACCTACCA ATCATTGGAG CAACCAATAA ACTGA
 
Protein sequence
MDASELLETI TLLIEQAEQG EIDPWDVKVI EVIDRYLELM TPKTTARGYE SDLSQSGQAF 
LSASMLVLFK ANTLMQLSTA EDLEDIEDSL LAENGDSLFH QTHRLPLERV LRRRPAAMPP
PKRRVTLQEL IAQLQIMANQ LKLVQKVSKP ERPKRQPTVK AMREALELAH QENLTEVAGE
LEQVLHFSAQ ELLLEQNYLN LEQLVQLWTQ TKQSHQLSAH ESVNSDLVSV FWALLLLSAQ
SKVELVQEEF YQEVRIRLLS DSVNTYQSLE QPIN