| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_3253 |
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| Symbol | |
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| ID | 3680402 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Anabaena variabilis ATCC 29413 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007413 |
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| Strand | + |
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| Start bp | 4047419 |
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| End bp | 4053700 |
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| Gene Length | 6282 bp |
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| Protein Length | 2093 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 637718604 |
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| Product | DEAD/DEAH box helicase-like |
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| Protein accession | YP_323756 |
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| Protein GI | 75909460 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1205] Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.224571 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0428877 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAACA ACAGCAACTA CCTTGACCCG ATCGCCGCAG TTGAGCAACC CCGCCAAGAT
TTTATTCGTT ATCTGCTAAC TGCTTACCCA CTACGAGATC CTCATCTACG CTACGGTTTA
AAACAGCAGC TAGAAGTACC TGGAACAGTT TGGCAGCATC CTTATTTAGA AGGTTCTCAA
CCTTATCGGC CTGCTAACAG TGTGAATGCG CTGGTAAGTC AGGGTGTTTT GCATCCAGAA
ATGGCAAGTT TATTCACTCC CAATCAGCGT CCTCTCTACG AACACCAAGA AAACGCTGTC
AAGGCAGTTA TTCAGCAAAA ACAAAACATC GTTGTTGCTA CTGGTACAGG TTCAGGTAAA
ACAGAGTGTT TCCTAATTCC CATGTTGGAT ATGCTGCTGA AAGAAGAAGC AAATTTAGCA
ATAGCTGGGG TTAGAGCGTT AATTTTGTAC CCCATGAACG CTTTAGTAAA TGACCAAGTT
AAGCGTTTAA GAAAATTACT ATGTAGTCAA GAAACTATAA AAATTAGATT CGGATTTTAT
ACTAGCCGCA CTGAAAATGA TAGGCACAAA GCAGAAGAAG CATTGGCGGA AGAATTACAA
GCTTATGAGT CTGAAGAACT TTGGGAGTTA TTTACACAAA AAGAAAAATC ATCTCTCAAT
CTCAGCACTC GTGAAAGATT AATTGATGAA GCTATTGCCA AAATTCAAAA AATCCAAGCA
ATTTCTAGGC AAGAAATTTG GGAGAAGCCG CCTCATATAT TAGTCACCAA CTATTCTATG
TTGGAGCATA TGTTAATTCG TCCCGTGGAA CGCAACAAAG TTTTTGCTAC TTCAGCATCA
ACTTTTAAAA TGTTAGTCGT GGATGAGGCA CACACATACA ACGGCTCGAC TGGTAGTGAA
GTGTCGATGT TGATAGAACG GCTAAAAGTT GCTGTCGAAC AAGAAAAACC TGGAAAGATT
CGCTGTATTG CTACCAGTGC CAGTTTAGGC GATGCTTCAG TTAATAATGA AATATTAGAG
TTTGCTACAA AATTTTTTGG GGAATCTTTT AATCAAGTAA TTCGCGGCGA TCGCGTCAAG
GCTATCGAAA GATTAGGTGA ACCTTATCTA TTATCTGCTG AACTTACTCA CGAAGAAATA
TTAGCATATT TAAGCATATT AGAATTGCCT AAAATTGATG ATGATTTAAG TATTTGGTTC
GACAGACTGA GTGGCTTTGT ACCTACTGAA CATCTAAAAG CAGCAGAGAC GAAAGCGCAA
GGTGATGTTC ACCAGTTTCT CTGGTATGCA CTTAAACAAC ATCCTATAGT CCACCGCCTC
ATTGAATTTC TAAGCCGTCA ACCCCAGCCT TGGGAGAAAA TTACACAATC AACAGAATTC
TGGTGTGTAA ATTTACCGTT CAAATCTGAC GGCACTATTG ATGATACTGA GACAAAATTT
GCCCTCGCTC ATTTATTACA ATTAGGCACT CTTGCTCGTG AGAATTCAGA AAGCTTACCA
TTACTGCCAG TTAGAATCCA CCTTTTATTT CGTAGTTTAG AAGGGATGTA TGCTTGCATT
AATCCTCAAT GTCCTGGTGG AGTTTGTGAT CCAAATTATG AAGACAAACC TCGGCGATAT
GGTCGATTAT ATTTGAACGA AAAAAGAACC TGTGATGATT GCAATTCTCC AGTTTTAGAA
CTGGGTAGTT GTTATCAGTG CGGTCAAGCT TATGCCTTTA CTCAAATAAA TGGTGTATCT
AAATTAGAAC CATTACCGCG CTCAAATCAA GGTTTAAGAG AAAATGACAA AATATACACC
CTGACTTCAG GATTATTAGA CAGCATTACG GAGGAAGAAG AAATTGGAGA AGAAGAACAA
GAATCTTCAC CAACAAACAC TTTAATTATT CGCCAGCGTG ATGGTTGGAT TGGACTACCC
ACATCAGTAA CATTTACGAA TAAATCTTCT GAACCAAATG AATTTTATTT AGCATGGCAT
CGCCCAAGAG ATAAAGATGC AAAAGATTTA AGTGGCTGCT ACCTTCCTAG ATGTGCTGCC
TGTGGAACAC GGCCAATTCG CGCTCAAGCG ATAAACCGCT TTGTAGCTTA TACAGATGAA
CCTTTAGAGG CGATGATTGA TAGCCTGTTT GATTTATTAC CTGAATCTCA AGAAGATCAA
GGTAGTGCGT CAAAACGCAA GCTATTAACA TTTTCTGATG GTCGTCAGGA TGCGGCATTC
TTTGCTTCAG ACTACCAGCG CACTCATACA GAAACAGTTT ATCGGCAAAT AATTTGGCAA
GCATTTCAAG AGCTTAATCC TGATGATGAT ATTGTTTCCA TTAATCAACT GATTAATAAA
GTAAAACAGC AATTTTTAGA AACATCCATT CCTCATCCAG ACCGAGATTC TAGAAAGAAC
TATCTCAGTT ACTATCCTGA TGATGAGGAA AGTTTAGAAA ATTATAGAGA CTGTCAAGAT
AGTGCAGAAG CTCGTGCTAA GGAATTATTA TTACGGGAAT TTGCCCTGCC TTTTAATCGT
CGCTCTACAT TGGAAGCCTA TGCTTTATTT GCTTGTCATA TTGAATTGAG GGATGAACGG
TTAATTGAAT TGGTAGCTCG TGAATTTGAG ATTTCAAATG CTGAAGCCAA GATTTTCTTG
ATAGTTCTCA CAGATATCAT TCGTCGCACA GGAATTGTGA GTATTGATGG TGCATCGCGT
TACTTCCCTG AAACTGGTGG AGTTGAAGGC GTTAGACCAG AAATGGTGGA CATTCAAGGA
AGGTCTAAAA ATTATCTGTT TTTAGAAAAG TCACCTGATG AACAGAAGAA ATTTAAAGAT
TCACCGTCAT TTATACCAAA GTGGAAGCAA AAAACAGGTG AAGTTAGTCA AGTTCAAAAT
AGACTTGGTT GGTATTACCT ACAGCTATTT GGTGACAACT TACCAAACAG AGATAAGTTT
GTTGCTCTAT TTAAACAATT AGAACAATTA CGCTTATTAG AAAAAGCTAA AAATGGCCAT
CAATTGAACT GGACAAGATT AAATATTATT AAAACTCAGC ATGATTGGTA TCAGTGCGAT
CGCTGTCAAC AAATTATCCA TGTTCCAGGT TTATCTGATG TCCAAAAATC TCAGACTAAG
TTGAATATTT TCGGTTGTCC AGCCTTCAAA TGCACTGGTC AACTTCAGCC TTACTATGCG
GAGAAAATAG AGCAAGTCAG AAACGAGCAT TATCAGCAGT ATATTATCAA AAATCGCCTA
CCTTTGCCGT TGCGATCGCA AGAACATACA GCGCAGTTAG GAGTCACCGA ACTAGAAAGA
CGCGAAAACC GTTTTCGTCG CGGTCAAATT AATCTCCTGA GTTGTTCTAC AACCTTAGAA
ATGGGTGTAG ACATCGGCGA ACTGCAAGCT GTGGTTTTAC GCAACTTTCC ACCCCATGTT
AGTAACTACC AACAACGCGC AGGACGCGCA GGACGGCGTA CTGATGGAGT GGCGATTACT
TTAATGTATG GCCAGCGTCG TCCCCATGAC CGATTTTATT TCGAGCAGCC TGAACAATTA
ATCGCAGGTA GTAATCAAAT TCCTAAGCTT GATGCTGATA ACTTCCAAAT TCAACAGCGT
CATATTCGCG CTGAATTACT AGCTGAGTTT TTGAAGACAA AGGAAAGAGG TGCAGAGAAA
GTTACCATTG CTGAATTTTT CAGCTTACCT GTGCATAAGT TTGATTCTTT AGACACACCG
CCACCCACAG CAATAGTTAG TGAATTACAA GAGTGGCTGC ATAGTGATGA TGCTCATAAT
TTGGCACAAT TATGGATCAA TAAGCTGAAA ATTTCTTATG CTGCCACCGA TATATTAAAT
CAATTTGTTG CCGCAATTTT AGTGTTTCAG CAAGCACAAT TAGCAGATTG GAATGATTTA
GTATTACTGC TTAAAGATAT TCAAGACAGT ATTACTGCTG AAACTGACCG TACAAAACGT
AAGGGGATAG AGAAGCGACG GGATGGTATT GAAGCGGAGT TAGAAAAAAT TGGGAAGCGC
AGACTGCACG ATGAATTAGT TCAAGCCAGT ATACTACCGA TTTATGGTTT TCCGATTGAT
GTAGTGCGGT TATTGACAGG GGAAAGTGAT GAGTTTAAAT CATCTCAAGG AAAGCATAGA
CTAGAACGCG ATCGCCGTCT TGCACTTGGT GAATATGCAC CTAGCCAAGA TATTGTAGTT
GACGACCGAG TGTATCAGAG TGTTGGCATT CTCAGACCGA GTGATTTAGA GCAAAAATAC
TATTGGGTTT GCAAGAATTG TAATCATTTT GAATCATCAA TTTCTGAACA AATAATTGAA
CAATGTTCTG TCTGTGGATG CAAACCTACT CCGGCTGCTG CTGGCAAGAT GAAGCTTTAC
AAAGTTCCTA AAGCCTTTAC TACAGACTGG TCAGTTACGC CAAAAGTTAC GCCATATACT
AAACCGCAAC GCCAACTAAC CTCACAGGTA TTTTTAGCCA AGTCTGGAGA AGACCAAGAA
CAATTAGAAT CTGAATTTTA CAAACTCACG GTCAATAAAG GCGGGATTCT ATTTCTCGCA
AATCAAGGAA GTTTGGGACG TGGTAAAGGC TTCAGTAAAG AAGGTTTTGC AATTTGCCAA
TACTGTGGGA GAGACCTAAG TGAACTGGTA CAAAAACAGC GTGAAGCAAA TAACGCCAAA
GGTGGTAGCA AAAAAGCTAG TTCTAAAGCC TCATCAACTG CCCATAAACA CCCAATTACT
GCTAAAGATT GTTCAGGTAC TGGATATCCA CATATTCATT TAGGGCATGA ATTTCGCAGT
GATTTGTTAA AAATTGAGTT TCAGAAAATA GCAAACCTCA AACCTTTATT TGGTGACGTT
GTTCATTATG GGGATGGTGG CACAGTTGCG TCTGTAACCG AACAAATATA TCATGACACC
GATGGTATGG CATTTTGGCG ATCGCTAACC TATGCACTGA TAGCCGCAGC CGCACAAGTA
ATTGATGTGC CTCGTTCAGA ATTGGATGGT TTGTTTACAC CATTACCAAA TCAACTTGCC
CAAATTATTA TATATGACAA CGTTCCAGGG GGAGCAGGTT ATAGCAAGCG CATTGCTGAT
CACTTTTTTC AGGTATTAGA GAAAGCTTTA GAAATTACTG CGTCTTGTAG TTGTGATACA
AGCTGCTATG ACTGCTTAAG AACTTATTCA AATCAGCCAT TTCATGCAGA ACTCAATCGA
AAAATAGTTG CTAATTTTCT CACGGATTTG GTTGTCAAAC CAGACCCAGA ACTACAAGCT
TTTGCACCTA ATGCGAATCG AGTGAAATTG TCCCAAATGG CTACACGCGT GCCTGCAATT
TGTCGTATGG CTGGTAAGGA AAGTATGATT TACTTACCCA GCTTGATCGA TACATTTAAT
TTAAATAATG GCTCGCCACT TCCTTGGTTA AAGCTGCTAA AAGATGCGGT TTATTCAATG
CAGCGCAGTA ATATTGCACT AGAATTAATT TTAAATCAAT TACCAGAACC GAATACTGCT
GCTTCTGATG CAACCAGGAG GAATTTGCAA TTATTACAGA AGCATTTGCA ACAGTGGGTA
GACCAAGAAT TACTCAAGCT GTATCAAACA TCTGTTAATG ATGTGCCAAT TTTATGTTTA
AGCACTCAGC AACAAAATCG CATTGCTTTA CAATTACATC AACAGGAATG GTTTGAAACC
AGAAGTGGTG AAGGTGTAGA TACTGTATTT CAACGTTTAC AAAACTTGCG ATCGCAAGCT
CGACCTGTAG AGGCAATAGA ACTAGAAGAC CCTAATACTA CAGTTATCTT CCCTGATAGA
ACCTGGAGTA ATTTAACAAT AACGCAACTA CGGCAAAGAC TCGGCATAGA CCGTGTTTTT
TCTGGTGGAG GTGTGAAGAT AGTTTATCGC GATCGCTACC TGAATGAAAA AGGAGGGAAA
ATCCTGGCTG ATCTCTTACA AGGTGATGGC ATAAATGAAA ATTCCTCTGT CACAATTTGG
GTTCTAGAAG ATTATAAAGG AGAGTTAGGT TCTCAGCGAA AAGCTAATTT GGAGGCGGCA
CTTACTCAAA TTCAACGTAT GGGAGTTTCT ACAACTGTGA AAGTTCAGCC TTGGTATGAA
CGCTCTTATT TTCCTCATTC CCGCGAGATG GAAGTGCTGA CAGCAAATGG TCAGCGATAC
AAAATTATGT TTGATAAAGG GATGGATTTC TTAGAGCTAA AAGCAACTGG TGTTTATTCA
GTAACAGAAT CGACATATGT TGTAATTAAT AAGCAGGATT GA
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| Protein sequence | MKNNSNYLDP IAAVEQPRQD FIRYLLTAYP LRDPHLRYGL KQQLEVPGTV WQHPYLEGSQ
PYRPANSVNA LVSQGVLHPE MASLFTPNQR PLYEHQENAV KAVIQQKQNI VVATGTGSGK
TECFLIPMLD MLLKEEANLA IAGVRALILY PMNALVNDQV KRLRKLLCSQ ETIKIRFGFY
TSRTENDRHK AEEALAEELQ AYESEELWEL FTQKEKSSLN LSTRERLIDE AIAKIQKIQA
ISRQEIWEKP PHILVTNYSM LEHMLIRPVE RNKVFATSAS TFKMLVVDEA HTYNGSTGSE
VSMLIERLKV AVEQEKPGKI RCIATSASLG DASVNNEILE FATKFFGESF NQVIRGDRVK
AIERLGEPYL LSAELTHEEI LAYLSILELP KIDDDLSIWF DRLSGFVPTE HLKAAETKAQ
GDVHQFLWYA LKQHPIVHRL IEFLSRQPQP WEKITQSTEF WCVNLPFKSD GTIDDTETKF
ALAHLLQLGT LARENSESLP LLPVRIHLLF RSLEGMYACI NPQCPGGVCD PNYEDKPRRY
GRLYLNEKRT CDDCNSPVLE LGSCYQCGQA YAFTQINGVS KLEPLPRSNQ GLRENDKIYT
LTSGLLDSIT EEEEIGEEEQ ESSPTNTLII RQRDGWIGLP TSVTFTNKSS EPNEFYLAWH
RPRDKDAKDL SGCYLPRCAA CGTRPIRAQA INRFVAYTDE PLEAMIDSLF DLLPESQEDQ
GSASKRKLLT FSDGRQDAAF FASDYQRTHT ETVYRQIIWQ AFQELNPDDD IVSINQLINK
VKQQFLETSI PHPDRDSRKN YLSYYPDDEE SLENYRDCQD SAEARAKELL LREFALPFNR
RSTLEAYALF ACHIELRDER LIELVAREFE ISNAEAKIFL IVLTDIIRRT GIVSIDGASR
YFPETGGVEG VRPEMVDIQG RSKNYLFLEK SPDEQKKFKD SPSFIPKWKQ KTGEVSQVQN
RLGWYYLQLF GDNLPNRDKF VALFKQLEQL RLLEKAKNGH QLNWTRLNII KTQHDWYQCD
RCQQIIHVPG LSDVQKSQTK LNIFGCPAFK CTGQLQPYYA EKIEQVRNEH YQQYIIKNRL
PLPLRSQEHT AQLGVTELER RENRFRRGQI NLLSCSTTLE MGVDIGELQA VVLRNFPPHV
SNYQQRAGRA GRRTDGVAIT LMYGQRRPHD RFYFEQPEQL IAGSNQIPKL DADNFQIQQR
HIRAELLAEF LKTKERGAEK VTIAEFFSLP VHKFDSLDTP PPTAIVSELQ EWLHSDDAHN
LAQLWINKLK ISYAATDILN QFVAAILVFQ QAQLADWNDL VLLLKDIQDS ITAETDRTKR
KGIEKRRDGI EAELEKIGKR RLHDELVQAS ILPIYGFPID VVRLLTGESD EFKSSQGKHR
LERDRRLALG EYAPSQDIVV DDRVYQSVGI LRPSDLEQKY YWVCKNCNHF ESSISEQIIE
QCSVCGCKPT PAAAGKMKLY KVPKAFTTDW SVTPKVTPYT KPQRQLTSQV FLAKSGEDQE
QLESEFYKLT VNKGGILFLA NQGSLGRGKG FSKEGFAICQ YCGRDLSELV QKQREANNAK
GGSKKASSKA SSTAHKHPIT AKDCSGTGYP HIHLGHEFRS DLLKIEFQKI ANLKPLFGDV
VHYGDGGTVA SVTEQIYHDT DGMAFWRSLT YALIAAAAQV IDVPRSELDG LFTPLPNQLA
QIIIYDNVPG GAGYSKRIAD HFFQVLEKAL EITASCSCDT SCYDCLRTYS NQPFHAELNR
KIVANFLTDL VVKPDPELQA FAPNANRVKL SQMATRVPAI CRMAGKESMI YLPSLIDTFN
LNNGSPLPWL KLLKDAVYSM QRSNIALELI LNQLPEPNTA ASDATRRNLQ LLQKHLQQWV
DQELLKLYQT SVNDVPILCL STQQQNRIAL QLHQQEWFET RSGEGVDTVF QRLQNLRSQA
RPVEAIELED PNTTVIFPDR TWSNLTITQL RQRLGIDRVF SGGGVKIVYR DRYLNEKGGK
ILADLLQGDG INENSSVTIW VLEDYKGELG SQRKANLEAA LTQIQRMGVS TTVKVQPWYE
RSYFPHSREM EVLTANGQRY KIMFDKGMDF LELKATGVYS VTESTYVVIN KQD
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