| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_1908 |
|---|
| Symbol | |
|---|
| ID | 3681782 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anabaena variabilis ATCC 29413 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007413 |
|---|
| Strand | + |
|---|
| Start bp | 2371642 |
|---|
| End bp | 2372427 |
|---|
| Gene Length | 786 bp |
|---|
| Protein Length | 261 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 637717249 |
|---|
| Product | Beta-Ig-H3/fasciclin |
|---|
| Protein accession | YP_322425 |
|---|
| Protein GI | 75908129 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2335] Secreted and surface protein containing fasciclin-like repeats |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0298726 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGGGTGA ATCAAAACAA ACTGCTGACC AATTTGGTAG GTGTAGTGAC GTTAGCAGGC
GCTAGCCTCT CAATCACCTT ACCATCGGGA GCAAGAGAAG TATTAAATCC CAATCCTACT
ATTTTCCAAG AAGCTCACTA TAATCGGGGT CAACGGATTC AAGCAAATGT TAACCAGATA
ACAAAAGACA ACAGCAAGAA ACAGGTAGCA CAAAATACAG GACGTACTAA TCCTAGACCA
AGTATTTTTA ACGAGCCTCC CTATAACCGT GGTAGCCGTA CTTCACCCAC TCCAGTTACT
CCTCCAGAAA CCCAACCTAC AACAGAAACA CCCACAACAC AACCACCAGC AGCAGAAACA
ACTAACACAG ACTCGAAAAA TCTGTTAGCG TTGGTGCAAT CAAATAACTC TTTTACCACT
CTCAACAAAG CATTACAAGC AGCCGGACTA ACAGAAACTT TACAAGGCAA AGATAACTTA
ACAATTTTTG CTCCTACCGA TGCTGCATTT GCTAAATTGC CACAAGATGC TCTACAAGCA
TTATTACAAC CAGATAATAA AGAAGTATTA CTCAAGGTGC TAACTTACCA TGTTGTTCCT
GGTAATGTTT TATCCACTGA TTTGAAATCT GGTGAAGTGA AAAGCGTCGA AGGTGGCACA
ATTAATGTAA AAGTTGATAA GCAAGGTGTC AGCGTCAACG ATGCGAAAGT AATACAAGCA
GATATCAAAG CCTCTAATGG CGTAATCCAT GCGATCGATA CAGTAATTTT GCCTGCTGAT
TTGTAG
|
|---|
| Protein sequence | MRVNQNKLLT NLVGVVTLAG ASLSITLPSG AREVLNPNPT IFQEAHYNRG QRIQANVNQI
TKDNSKKQVA QNTGRTNPRP SIFNEPPYNR GSRTSPTPVT PPETQPTTET PTTQPPAAET
TNTDSKNLLA LVQSNNSFTT LNKALQAAGL TETLQGKDNL TIFAPTDAAF AKLPQDALQA
LLQPDNKEVL LKVLTYHVVP GNVLSTDLKS GEVKSVEGGT INVKVDKQGV SVNDAKVIQA
DIKASNGVIH AIDTVILPAD L
|
|---|
| |