| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_1130 |
|---|
| Symbol | |
|---|
| ID | 3683521 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anabaena variabilis ATCC 29413 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007413 |
|---|
| Strand | - |
|---|
| Start bp | 1382692 |
|---|
| End bp | 1384137 |
|---|
| Gene Length | 1446 bp |
|---|
| Protein Length | 481 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637716466 |
|---|
| Product | secretion protein HlyD |
|---|
| Protein accession | YP_321649 |
|---|
| Protein GI | 75907353 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.522497 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.0570738 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTAGATC AAAAGCGCAT TATATTCCGT AAAGAATCCC TAGAGCGTCT ATCTTCTCCT
GAAAGATTAG ACCAACTGAT GCAGGTAGTC AGTCCTAAAA GCTGGCTACC TCTTGTGGCG
TTGGGTTCTA TTGTGGGAGT TGCTTTTATT TGGGGTATTT ATGGTAGCAT TCCCATCACC
GTTGAGGGTC GGGGTGTATT GATTTACCCT AGCAATGTTG TACCGCTACA ATCCAAAAGT
GCTGGGCAAA TCATGGCGCT GAATGTGAAA GTGGGGGATG TGATTAAAAA AGGGCAGGTG
TTAGCGACAA TTGACCAAGC TGAACTGCGT AAGCGACTGC AACAACAGCG AGGGAAACTA
ACACAACTGG AGTCACAAGA TAAAGCTGTT GGTTCGTTGC AAGGCCGGAG GTTGGAACAA
GAGGAGCGAT CGCAGCAACA ACAGCGTCAG TATCTCCGGC AGCGTATACT AGAATTACAA
GCAATCACGC CTTTACTCAA AACCAAAGGT AACACCTCTG TTGGTCAGCA ACGTCAAGGC
TTACAGCAAC GTCTCCAGCA AGCTCAAGCT CTGACTTCTG TGTTTTTACG GAGGATGAAA
ATTCGCCAAG AATTATTTCA AAAAGAAGGG GCGATTTCCG GGGATGAAGC CCTCAAAGCA
GAACAGGAAT ATCTGCAAAA CTTAGAAAAA ATCGCTGATA TTCAAGCGCA ATTAAAAGAA
CTAGATGTCA AAGAAACTCA ACAAGAAAAA GATTATCGGG AAAATCTGAC CCTTGTGGCT
GACTTGCAAT CACAGTTGAA ACAATTAGAT ACTCAACAAG CTTCCGTGGC TCAACAAGAT
TTAGAAAATG TCACGGCGAG AAATAAAGAA ATTCAAGAAG TCAAGCGAGA GATTGGCGCT
CTGGAACTAC AACTAGGCGA TAATAGCCAG ATTATTAGTC AACATAGCGG ACGCATTTTA
GAAATTACCT TGACACCAGG GCAAGTTGTT AACGCAGGTA CACGGTTAGC TACCATAGAG
GCGGAAAATC CCCAGAGTAA GTTGGTTGGT GTCACCTACT TTCCTGTGGC GGAGGGGAAG
AAAATTCAGC CGGGGATGTC TATCCAAATT ACTCCCCAAA CGGTGAAGCG GGAACGCTTT
GGGGGGATTG TGGGTAATGT CACCAGCATT TCTCGCTTCC CGATTACCAA GGAAGCGGCT
GCTAATGAAG TAGGTAATTC TGAGGTGCTG GAAGGTTTAG TATCTCAACA GCAAGGATTA
ATACAAGTAT TCTCTCACTT AGAACTAGAT GCCAATACAC CAAGCGGCTA TAAGTGGTCT
TCTTCCACAG GGCCGCACCT GAATATTTCT TCTGGAACTA CTACCATTGT GAGGGTCAAG
GTAGAAGAAC GCGCTCCCAT CACCTTTGTT TTACCAATCT TGAGGTCTAC CAGTGGTATC
TACTAA
|
|---|
| Protein sequence | MLDQKRIIFR KESLERLSSP ERLDQLMQVV SPKSWLPLVA LGSIVGVAFI WGIYGSIPIT
VEGRGVLIYP SNVVPLQSKS AGQIMALNVK VGDVIKKGQV LATIDQAELR KRLQQQRGKL
TQLESQDKAV GSLQGRRLEQ EERSQQQQRQ YLRQRILELQ AITPLLKTKG NTSVGQQRQG
LQQRLQQAQA LTSVFLRRMK IRQELFQKEG AISGDEALKA EQEYLQNLEK IADIQAQLKE
LDVKETQQEK DYRENLTLVA DLQSQLKQLD TQQASVAQQD LENVTARNKE IQEVKREIGA
LELQLGDNSQ IISQHSGRIL EITLTPGQVV NAGTRLATIE AENPQSKLVG VTYFPVAEGK
KIQPGMSIQI TPQTVKRERF GGIVGNVTSI SRFPITKEAA ANEVGNSEVL EGLVSQQQGL
IQVFSHLELD ANTPSGYKWS SSTGPHLNIS SGTTTIVRVK VEERAPITFV LPILRSTSGI
Y
|
|---|
| |