| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apre_1583 |
|---|
| Symbol | |
|---|
| ID | 8398395 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anaerococcus prevotii DSM 20548 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013171 |
|---|
| Strand | - |
|---|
| Start bp | 1719778 |
|---|
| End bp | 1721091 |
|---|
| Gene Length | 1314 bp |
|---|
| Protein Length | 437 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 644995947 |
|---|
| Product | PTS system, lactose/cellobiose family IIC subunit |
|---|
| Protein accession | YP_003153325 |
|---|
| Protein GI | 257067069 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1455] Phosphotransferase system cellobiose-specific component IIC |
|---|
| TIGRFAM ID | [TIGR00410] PTS system, lactose/cellobiose family IIC component |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 39 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTGAAA CAAATAAAAT AAGCTTCATG GACAAGTTTA CTGAAGCTGC TATGAAATTT
GGTGCTCAAG TACACCTTCG CTCACTTAGG GATGCCTTCG CAATAATGAT GCCCCTATTT
ATATTAGCAG GTCTTGCGGT ATTAATAAAT TCTGTAATAT TTCCTAAAAT ATTAAGTGAA
AGTGCCATTC AAACAGCAGG ACATTGGGCA ACTTCTATAG CAAATGCTAC CTTAAATGTT
TCTGGATTAA TCTTGTGTGG AATAATAGGT TATACTCTAT CTAAAAATAA AGGTTACAAA
AGTCCTTATA CATGTGTAAT GATAGCTATA GCAGCATTAA TTGTAATGAT GCCACAAACA
CTAAAAATAG CGGCTACTGA TGGATCTGAA GTTGAAGTGG GAGGAATCTT AACCTATGGA
AACCTTGGTA CCTCTTCAAT GTTTGCGGGT ATTATTGTAG GTTTATTGTC TACTGAAATT
TATTTGAGAC TTTCTAAAAT TGATAAGTTA AGGGTAAATA TTGGTGGAGA TGTACCACCA
CAAGTAAATG CATCCTTTAA TAATATGATT CCTGCCATGC TATCAATTAT TATATTCTCT
ATTGTAAGTT TTGTGCTATA CTCAGTATTT AATACAGACT TAATAACTTT GATAACAACA
ATGATTCAAG AGCCTTTGAG GAAAGTAAAC ACTTCTCTTG TTGGTACAGT ATTGATATAC
AGCTTTGGAA ACTTATTGTT CACATTCGGT ATTCACCAAA CAGTAGTAAA TGGAACAATC
CTTGAACCAT TGCTTCTTGT AAATATGAAT GAGAATATGG CAGCTGCAGC AGCAGGCAAA
GAGATTCCTC ATATAATTAA TTCTACATTC GTCCCAACAT TTGGCATGCT AGGTGGTACT
GGTTCAACAA TATGCTTGTT AATTGCAGCA TTCCTATTTT TCAGGAAAAA TCAACAATAC
AGTGAATTAG GGAAATTAGC TGTAGCTCCA GGATTATTTA ATATAAACGA ACCTGTTATA
TTTGGTTTCC CTATAGTGTT CAACTTGCCA ATGATAATAC CTTTCGTATT GACTCCAGCT
ATAGGAATTA TAATAGCTTA TTTTGCAACA GCAATAGGTT TTATGAATAA ATGTACAGTG
CTTGTGCCTT GGACTACTCC TCCATTATTA AATGGATTTT TAGCAACTGG AGGAGACTTC
AGAGCTATTA TAGTTCAATT AGTGATAATT ATTATAGGTG TACTATTATA CTTGCCATTT
ATGAAGATAA GTGAAAGAGT AAGCAGAAAA CAAGCAGAAG CTTTAAATAA CTAG
|
|---|
| Protein sequence | MTETNKISFM DKFTEAAMKF GAQVHLRSLR DAFAIMMPLF ILAGLAVLIN SVIFPKILSE
SAIQTAGHWA TSIANATLNV SGLILCGIIG YTLSKNKGYK SPYTCVMIAI AALIVMMPQT
LKIAATDGSE VEVGGILTYG NLGTSSMFAG IIVGLLSTEI YLRLSKIDKL RVNIGGDVPP
QVNASFNNMI PAMLSIIIFS IVSFVLYSVF NTDLITLITT MIQEPLRKVN TSLVGTVLIY
SFGNLLFTFG IHQTVVNGTI LEPLLLVNMN ENMAAAAAGK EIPHIINSTF VPTFGMLGGT
GSTICLLIAA FLFFRKNQQY SELGKLAVAP GLFNINEPVI FGFPIVFNLP MIIPFVLTPA
IGIIIAYFAT AIGFMNKCTV LVPWTTPPLL NGFLATGGDF RAIIVQLVII IIGVLLYLPF
MKISERVSRK QAEALNN
|
|---|
| |