| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_1335 |
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| Symbol | |
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| ID | 8414220 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | + |
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| Start bp | 1501196 |
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| End bp | 1502689 |
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| Gene Length | 1494 bp |
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| Protein Length | 497 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 645022932 |
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| Product | PTS system, trehalose-specific IIBC subunit |
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| Protein accession | YP_003180350 |
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| Protein GI | 257785133 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1263] Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific |
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| TIGRFAM ID | [TIGR00826] PTS system, glucose-like IIB component
[TIGR01992] PTS system, trehalose-specific IIBC component |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.135548 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.00345051 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCAAAGT TCGACCATGA TGCTCGTGAA CTCCTCGAGC TCGTTGGCGG CAAAGACAAC
ATTGCTGCGG CTTCACACTG TATGACACGC ATGCGATTTG CCTTGAAAGA TCCTTCAAAA
GCGGATGTGG CTGCCATTGA AAAGCTTGCA TCCGTTAAAG GAAGTTTCAC GCAAGCCGGC
CAGTTTCAAG TTATTATCGG CAATGACGTC GCCGACTTTT ACGACACCTT TGTCGGTATT
TCTGGCGTAA GTGAGGCTTC AAAACAAGAC GTCAAATCAG CCGCCCTTCA AAACACAAAC
ATTTTGCAGC GAGCCATGGG AGCCATTGCC GAGGTCTTTG CTCCCCTGAT TCCCGCAATC
ATTACCGGCG GCCTTATTCT TGGCTTCCGA AACGTGCTTG GCGAGATGCC CTACTTTGGA
CCTGAAGGCA ACCAGACCCT CGCTTCGCTT TCCGTCTTCT GGACGGGCGT ATATAACTTC
TTGTGGCTTA TTGGCGAGGC AGTCTTCCAT GCCGGCATCC CTGTAGGCAT TTGCTGGTCA
ATCACAAAGA AAATGGGCGG GACCCCCATG CTCGGCATTG TGCTTGGCCT CACCCTCGTT
TCCGGCCAGC TCATGAATGC CTATGCTGTT TCAGGAGCAA CCGCCGCTGA TTGGGCTACC
CATACATGGA ATTTTGACTT CGCGCAGGTC CGCATGATTG GATATCAGGC TCAAGTTATC
CCCGCTATTC TCGCTGCGAT TACCTTCAAC TACCTCGAGC GATTCTTTAA GAAAATCACG
CCATCCGTCA TTCAGATGAT CGTAGTGCCC TTCTGCTCAC TTTTGCTTGC CGTTATGGCT
GCTCACTTCG TGCTTGGCCC CATTGGCTGG ACCATCGGAT CTTGGATCGG AAACATTGTT
CTCGCAGGCA TCACAAGTCC GTTTGCATGG CTCTTTGGCC TTATCTTTGG CGCCGTATAT
GCTCCCCTTG TCATCACTGG CTTGCACCAC ATGTCCAATG CCGTTGACAT GCAGCTTATT
GCAAGTTCCA ATAACTATGG CACTCCACTG TGGCCCATGA TCGCACTTTC CAATATTGCT
CAGGGTTCAT CGGTTCTCGC CATGTCTGTC CTTCAGAAGC ATGACGAAAA TGCTCAGCAG
GTAAACATCC CTTCCATCAT CTCTTGCTAC CTTGGCGTTA CCGAACCCGC TATGTTTGGC
GTCAACCTCA AATACGGTTT CCCCTTCGTA TGCGCTATGA TTGGCAGTTC CATTGCAGGA
GGTGTCTGTA CGGCCTTTGG TGTCAACGCT CTCTCCATTG GCGTTGGTGG ACTCCCCGGA
ATTCTTTCAA TTCGCCCCGA GTTTATCGGC ATCTTCGCCG TTTGCATGGC CATCGCTGTA
GTGGTTCCAT TTGTTCTTAC ATTCACCATC GGCAAACGCC AAGGTATTGA TAAAGGTATC
GATACCAATG TCGTCACGCT TGATGGCGAG AAAAACAGTG CCCTTTCGGC CTAA
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| Protein sequence | MAKFDHDARE LLELVGGKDN IAAASHCMTR MRFALKDPSK ADVAAIEKLA SVKGSFTQAG
QFQVIIGNDV ADFYDTFVGI SGVSEASKQD VKSAALQNTN ILQRAMGAIA EVFAPLIPAI
ITGGLILGFR NVLGEMPYFG PEGNQTLASL SVFWTGVYNF LWLIGEAVFH AGIPVGICWS
ITKKMGGTPM LGIVLGLTLV SGQLMNAYAV SGATAADWAT HTWNFDFAQV RMIGYQAQVI
PAILAAITFN YLERFFKKIT PSVIQMIVVP FCSLLLAVMA AHFVLGPIGW TIGSWIGNIV
LAGITSPFAW LFGLIFGAVY APLVITGLHH MSNAVDMQLI ASSNNYGTPL WPMIALSNIA
QGSSVLAMSV LQKHDENAQQ VNIPSIISCY LGVTEPAMFG VNLKYGFPFV CAMIGSSIAG
GVCTAFGVNA LSIGVGGLPG ILSIRPEFIG IFAVCMAIAV VVPFVLTFTI GKRQGIDKGI
DTNVVTLDGE KNSALSA
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