| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_1256 |
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| Symbol | |
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| ID | 8414135 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | - |
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| Start bp | 1406158 |
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| End bp | 1407444 |
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| Gene Length | 1287 bp |
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| Protein Length | 428 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 645022848 |
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| Product | PTS system, lactose/cellobiose family IIC subunit |
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| Protein accession | YP_003180272 |
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| Protein GI | 257785055 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1455] Phosphotransferase system cellobiose-specific component IIC |
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| TIGRFAM ID | [TIGR00359] phosphotransferase system, cellobiose specific, IIC component
[TIGR00410] PTS system, lactose/cellobiose family IIC component |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAGAAGT TACAAAAGTT TCTTGAAGAA AAGCTGGGAC CGGCAATGTC CGTTCTCGGG
TCTAATCGGT ATTTACTGGC GGTAAGAGAT GGTGTTATCG GAGCGCTTCC TCTTATTATC
GTAGGTTCCT TCTTTTTGAT TATTGCGTTT CCTCCTATCC CTCAAGATTG GGAAATTTAT
AAGTTCCTTT CTCAAAATGC CGCAAAGATT CTTCTTCCAT ATCGAATGAC CATGTACATC
ATGGCGCTTT ATGCCGTTTT TGGAATGGGA AACAGTCTTG CTAAATCATT CAAGTTAGAC
GGGCTTTCTG GCGCGATTCT ATCCGTTATG GCTTTTCTTC TTACCATCAA CCCAGTTAAC
GTGTTAAAAG ATGCAAACGC TGGTGTAACT GGCTTTGTTA TTCCTATGGC AAATCTTGGA
TCTGCAGGTC TTTTTGTAGG TATTATTTCA ACTTTTATTG CAGTTAATAT TTATCGTTTT
ACACAGCACT CTAACTTTAA GATTACAATG CCTGAACAAG TGCCTGAATC AGTTTCTCGA
TCTTTTGAGG CACTTACTCC AACGCTGCTT GTTATTCTTC TTTTTGGCTC CATTACTTAT
TACTTTGGAT TTAACTGGAA TGCAGCCATT ACCACTCTCA TCAAGCCTCT TGTGTATGCA
ACTGATAGTC TTCCTGCTGT TATGCTTATT TCGTTGCTCT ATGGATTCTT CTGGTTCTTT
GGTATTCATG GTGCCTCGAT TGTTGGTTCA ATCGCACGTC CTTTATGGCT TACTTTGCTT
GAGGCAAATA CCACTGCAGT TGCCGCTGGC GTTGCAGGAA CTCAACTTCC TTCGATTAGT
GCGGAGCCGT TCTATCAATG GTTCATTTTC ATTGGTGGTG CTGGTACAAC AATTGGACTT
GCAATTTTGC TGGTAACTGT TTGTAAGTCT AAGTATGCAA AAGATCTTGG TCGCATTGCA
TTTTTCCCGG CGCTCTTTAA CATCAATGAG CCAATTATTT TTGGTGCTCC TATTGTTTTG
AATGTTACCC TTGCAATTCC TTTTGTGCTT ACACCTGTTG TGTGTGGAGT TATATCTTGG
TTTGCAACAG TGCTTGGTCT GGTAAATCGC GTATCAGTTA ACGCCCCTTG GACACTTCCA
GGACCTATTG GTGCATATCT TGCGACTGGT GGAGATTTCC GAGCTATTAT TTTGAGTATT
GTTTTGATTT TAGTTTCAAT TTTGATTTAT TATCCATTCG TAAAAGTTTG GGATAAACAG
AATCTCTCTC AAGAGCAGAA TGCATAA
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| Protein sequence | MEKLQKFLEE KLGPAMSVLG SNRYLLAVRD GVIGALPLII VGSFFLIIAF PPIPQDWEIY
KFLSQNAAKI LLPYRMTMYI MALYAVFGMG NSLAKSFKLD GLSGAILSVM AFLLTINPVN
VLKDANAGVT GFVIPMANLG SAGLFVGIIS TFIAVNIYRF TQHSNFKITM PEQVPESVSR
SFEALTPTLL VILLFGSITY YFGFNWNAAI TTLIKPLVYA TDSLPAVMLI SLLYGFFWFF
GIHGASIVGS IARPLWLTLL EANTTAVAAG VAGTQLPSIS AEPFYQWFIF IGGAGTTIGL
AILLVTVCKS KYAKDLGRIA FFPALFNINE PIIFGAPIVL NVTLAIPFVL TPVVCGVISW
FATVLGLVNR VSVNAPWTLP GPIGAYLATG GDFRAIILSI VLILVSILIY YPFVKVWDKQ
NLSQEQNA
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