| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_1180 |
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| Symbol | |
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| ID | 8414058 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | - |
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| Start bp | 1320602 |
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| End bp | 1321618 |
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| Gene Length | 1017 bp |
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| Protein Length | 338 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 645022774 |
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| Product | RNA methyltransferase, TrmH family, group 3 |
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| Protein accession | YP_003180199 |
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| Protein GI | 257784982 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0566] rRNA methylases |
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| TIGRFAM ID | [TIGR00186] rRNA methylase, putative, group 3 |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0000228447 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.0000274792 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCAAGAA ATCAGCGTTC TACCTCTAAA AATACTCGTT CCGGGGGTGC TGCAGGTCGC
GGTGCTTCCA GTCGCGGTGC TTCCGGCCGC GGTGGAGCTA CAGGTCGTGG CGGTTCTGCA
GGTCGCGGCT CCAAGAAGGC TGCCGACTGG GGCGGTTATT TCGGCTCCAA GAATGGCAAG
GGCTCTAAAG GTGGCCGCTC TGCACAAGGC GTACGCGCAG TTCAGGGTAC TCGCGGACAG
CGAGGAGCTG GCGCTGGACG TCCTGGCAAC AAGAAGCCTG CAACTGATTT AATCGAAGGT
CGTCGTGCAG TAGCAGAGGC GCTGACCGTT GGTATTCCGT TGAAGAATGC GCTGGTACAG
GCTGCAAGTG GACAGAAGGA CCAAGAGATT GAGGCTCTTG CTCGCCAGCT TGAGCAGGAG
GGTATTCCTG TCGAGCGTGT TGCAAGGCCA GTGCTTGACT CGCTTTCAAG CCATGGTGCT
CACCAGGGAG TTATTGTCCG TACGCAGCCT TTTGCCTACG CTGACCTCTC TGAAATTATC
CAGCGCGCCG GTTCCGCAAA TGCTCTTGTT GTAGTTCTTG ATCACGTCAC CGACGAAGGA
AACTTTGGCG CAATTGTAAG AAGTGCCGAG GTAGTTGGTG CAGCTGGCGT TGTTATTGCA
AATGCCCGCG CCGCCCGCGT TGGCGTTGGA GCATACAAGA CGTCCGCAGG AGCCGTACTT
CATTTGCCAA TCGCTCAGGT TTCTAATTTG CCACGTGCGC TTGAAGAGCT TAAGGCCGCA
GGTTTTTGGA CATGTGGCTC TACCGAGCAT GCTACCCAGT CCGTGTGGGA GGCTCCTATG
GGAGGCCGCC TTGCACTTGT TATGGGTTCT GAAGGTTCAG GAATATCTCG CCTTATGCTC
GAGAAGTGCG ATTTTACGTG CAAACTTCCT CAGTTTGGCC AGGTAGAGTC TCTGAACGTT
GCTCAGGCAA CGACGGTTAT GTGCTACGAG TGGCTCCGTA GGACCCAGGA AGCGTAA
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| Protein sequence | MARNQRSTSK NTRSGGAAGR GASSRGASGR GGATGRGGSA GRGSKKAADW GGYFGSKNGK
GSKGGRSAQG VRAVQGTRGQ RGAGAGRPGN KKPATDLIEG RRAVAEALTV GIPLKNALVQ
AASGQKDQEI EALARQLEQE GIPVERVARP VLDSLSSHGA HQGVIVRTQP FAYADLSEII
QRAGSANALV VVLDHVTDEG NFGAIVRSAE VVGAAGVVIA NARAARVGVG AYKTSAGAVL
HLPIAQVSNL PRALEELKAA GFWTCGSTEH ATQSVWEAPM GGRLALVMGS EGSGISRLML
EKCDFTCKLP QFGQVESLNV AQATTVMCYE WLRRTQEA
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