| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_1042 |
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| Symbol | |
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| ID | 8413915 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | - |
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| Start bp | 1177785 |
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| End bp | 1179584 |
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| Gene Length | 1800 bp |
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| Protein Length | 599 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 645022631 |
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| Product | ABC transporter related |
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| Protein accession | YP_003180061 |
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| Protein GI | 257784844 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAAAGC GTCAAAACCA AAATGTTCAA GCTACTGAGT CCAACCAAAA CACAAAACAG
GATTCTCAAC AATCCGAAAT AAATCCTGTT ACTGTGCTGC TTGAGTGGTC AGATAGAAAA
GGTATGTATG CGCTGTCTGT CATTCTTGCC ATTATTGGTG TTTTTGGTGG TATGGTTCCC
TATGTTGCTG CAGGCAACAT GGTAGTTGGC ATCTTTAATG GAATTCAAGA ATGGCCGTTT
TACCTTCATT GGGGACTTAT AGCGGGCTTC AGCTATTTAG TTAAAATAAT TTTCCATCAT
CTTTCAACTA TCGTTTCTCA TAAGGCAACG TTTGCAACAA TTGCAAACAT GCGCACTCGA
GTAGCAAAGA AGCTGACGAG CATCCCAATG GGATATGTTC TTTCTACTCC TTCTGGTTCT
CTAAAACGCC TTTTAGTCGA GAAAATCGAT AGCATCGAAA CTACGCTTGC TCATGCAGTT
CCCGAGCTTA CTTCAAACCT TACTGCTGCA TTTGCAGTTT TTGTTTATTT GATTATTTTG
GATTGGCGTC TTGCCCTTGC TGCATTACTC ACCATTGTCG TAGGACTTGC ATGTTTATCA
GGCATGATGA AAGACTATGA GTACTGGTAT CAGAATACTA TTGTTACTGG TAGAGAGATG
AATAATGCCT CAGTTGAGTA TGTGTTAGGG ATTGAGGTAA TTAAAGCTTT TGGACAGTCG
GCAAGTTCTT ACGAGAAGTT CTCTAAAGCG GTTTACGCCT CTGCTCATGC TTTTATTGAT
TGGATGAGTC ACTGTCAAAT TTGGCAAGAT GCCATGCTAT CAATTGCCCC AGCAACATTA
GTAACGGTAT TGCCCTTAGG ATGCTTATTT GTACTTCAGG GAACTCTTTC TCCTTCTACC
TTTGTCATGT GTGCAGTGCT TTCTTTAGGC ATTTTTCAGC CGCTCTTTGA AGCAATGAGC
TTTATGGATT CTCTTGCACA GGTTAGCTCT GTTGTTAAGG AAATTTCTGA GGTTTTGAAT
TACCCAGATC AGATTAGAGC TGAGGTTCCT TGCACACTTA CGGGAACCGA AATTAAACTG
AGCGATGTTC GTTTCTCGTA TGGAAGCAAT GAGGTAATTC ATGGGATTAC CTTAGATATT
AGCCCAGGAC AAGTTACGGC GCTTGTTGGT CCAAGTGGAT CTGGTAAATC AACTGTTGCA
CGTCTTATTG CTGGTTTCTG GGATCCAAAT GAAGGTTCTG TATCTATTGG TGGACAAGAT
ATTCGCTCCT GTACTCCATC TCAACTTGCA GATCTTGTAG CTTACGTTGA TCAAGATAGT
TACCTTTTTG ATGAGACCAT TATGGAAAAC ATCAGAATGG GTAAAAAAGA CGCCACCGAT
GATGAGGTAA TTGCTTGTGC AAAAGCTTCT GGTTGTCATA ACTTTATTCA ATCGCTTCCT
CATGGCTATC AAACTGTCAT AGGAGGCTCA GGTGGGCATC TTTCTGGTGG AGAGCGTCAG
CGCGTGGCAA TTGCTCGAGC TATGCTCAAA GATGCGCCTA TCATCATGCT TGATGAAGCA
ACGGCCTATG CAGATCCAGA ATCGGAAGCA GAGGTTGAAT CTGCAGTTGC AAAGTTGGTA
GCTGGTAAAA CGCTGGTTGT TATCGCGCAC CGTCTATCAA CCGTACAAAA TGCCGACAAA
ATTGTTGTCG TTAATGATGG CTCTATTGAA GCTGAAGGTA CACACGAACA GCTTATGGAG
ACATGCCCGC TCTATGCAAC TATGTATCGC GCTCATATCG GCGCACTTGA TGAGGCTTAA
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| Protein sequence | MTKRQNQNVQ ATESNQNTKQ DSQQSEINPV TVLLEWSDRK GMYALSVILA IIGVFGGMVP
YVAAGNMVVG IFNGIQEWPF YLHWGLIAGF SYLVKIIFHH LSTIVSHKAT FATIANMRTR
VAKKLTSIPM GYVLSTPSGS LKRLLVEKID SIETTLAHAV PELTSNLTAA FAVFVYLIIL
DWRLALAALL TIVVGLACLS GMMKDYEYWY QNTIVTGREM NNASVEYVLG IEVIKAFGQS
ASSYEKFSKA VYASAHAFID WMSHCQIWQD AMLSIAPATL VTVLPLGCLF VLQGTLSPST
FVMCAVLSLG IFQPLFEAMS FMDSLAQVSS VVKEISEVLN YPDQIRAEVP CTLTGTEIKL
SDVRFSYGSN EVIHGITLDI SPGQVTALVG PSGSGKSTVA RLIAGFWDPN EGSVSIGGQD
IRSCTPSQLA DLVAYVDQDS YLFDETIMEN IRMGKKDATD DEVIACAKAS GCHNFIQSLP
HGYQTVIGGS GGHLSGGERQ RVAIARAMLK DAPIIMLDEA TAYADPESEA EVESAVAKLV
AGKTLVVIAH RLSTVQNADK IVVVNDGSIE AEGTHEQLME TCPLYATMYR AHIGALDEA
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