| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0950 |
|---|
| Symbol | |
|---|
| ID | 8413821 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Atopobium parvulum DSM 20469 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013203 |
|---|
| Strand | - |
|---|
| Start bp | 1069687 |
|---|
| End bp | 1070568 |
|---|
| Gene Length | 882 bp |
|---|
| Protein Length | 293 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 645022538 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_003179970 |
|---|
| Protein GI | 257784753 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0600] ABC-type nitrate/sulfonate/bicarbonate transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.123271 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGCGCATA ATCCGCACAT AAAAGATAGT TTCTCTGACC GAGGTAGTGC CCCAACAGGT
GCTGCCTCGG CATACTTTTC TGCGGAGAAA AGCGGTTGCA CTTCATGCAC TCAGACTATT
CGCAAAATTA TTTCAAGTTG GGGAGTTCGT TTAGGTGTCC TGGTATTTTG GCTTGCTATA
TGGCAGATAG TTGCAGTTGC CATCAACCAG GATATTGTTT TAACTTCGCC TATACAGACT
ATCCAGACGC TTTTCTCGCT TGCTCAACTA CGCGAATTTT GGGTTTCTAT TGGTCTTTCT
CTTTTACGTA TTTTTGTTGG TGGAGCGCTT GCCTTTACAG CTGGTTCTTT GCTGGCGTTT
TTGAGTTTTA AGTACAAGCT GGTCAAACTT CTTTTTGAGC CACTTATTTC TACCATTAAG
TCAATTCCGG TGGCATCATT TGTCATCTTG TTACTTATCT GGGTTCGTAC ACCCTATCTC
TCAATTTCAA TTTCGTTTTT GATGGCACTT CCTATTATTT ATATTGCGGT GCTTGAAGGA
CTTCTTGGTA CTGACCAGAA GCTAATTGAA ATGGCCAACG TGTACCAAAT TCATGGCTGG
TATCGCGTTA AGGCAATATA TTTGTCACAA CTTATGCCCT CGCTCAAGAC AGCAACCTCA
CTTGCTATGG GATTTTGCTG GAAGTCAGGA ATTGCTGCCG AGGTCATTGG CCTTCCTACA
TTTTCCATTG GTGAGCATCT CTATAATGCT AAAGTGTACC TAGATACACC AGCGCTTTTT
GCATGGACAC TTGTAGTTAT TGTGATGAGT GTACTTGGCG AGAAGATTGT AATGTGGTTA
GTTTCATGGG CTGCTACAAG GTTAGAAAAG AGCTGTTCAT GA
|
|---|
| Protein sequence | MAHNPHIKDS FSDRGSAPTG AASAYFSAEK SGCTSCTQTI RKIISSWGVR LGVLVFWLAI
WQIVAVAINQ DIVLTSPIQT IQTLFSLAQL REFWVSIGLS LLRIFVGGAL AFTAGSLLAF
LSFKYKLVKL LFEPLISTIK SIPVASFVIL LLIWVRTPYL SISISFLMAL PIIYIAVLEG
LLGTDQKLIE MANVYQIHGW YRVKAIYLSQ LMPSLKTATS LAMGFCWKSG IAAEVIGLPT
FSIGEHLYNA KVYLDTPALF AWTLVVIVMS VLGEKIVMWL VSWAATRLEK SCS
|
|---|
| |