| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0920 |
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| Symbol | |
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| ID | 8413791 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | - |
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| Start bp | 1033351 |
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| End bp | 1034343 |
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| Gene Length | 993 bp |
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| Protein Length | 330 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 645022508 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | YP_003179940 |
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| Protein GI | 257784723 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.311537 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCACGGT TTGTTTGGTA CGTTACAAAG AGGATTTTGA GCTACATTGT GATGATTTTT
GTTGCAACTT CGCTCACATT CTTCCTTGCA TCAGCGTTTA TGAATCCACG CTCTAATTTG
GAACAGCGTA CTCCACGCCC TCCACAGGAG TCTATTGAGG CTAATTTGAA TAGAGCAAAT
CTTAATGATA AGACTCCAGT TATTGAGCGT TATCAGATCT GGATTACCAA CCTATTTACA
AAGTTTGATC TTGGCATGAC TCCAACAGGA GATAGTGTTA ACCGTGAGAT GAGCTCTAAG
TTTATGGCTT CTATCGAGCT CATGACTCCA GCGACTATTT TGTCGGTTGT TATTGGCGTT
AGCCTGGGCG TTTATACCGC TCAGCGCCAG TATCAGTGGC AAGACCGTTT CTTTAGCGGC
GTTGCTTCTG TTTTATTGGT TATTCCAACC GTTGTTATGG CAATTTTGAT TGTCTTTGCA
GCAATCGAGA TTAATGCACG TGCCGGTTCT CGTATTTTCT ACGTCACTGA TCTTTCCAGT
GGAGATACTG GAAATTTCTT CACGTGGCTC ATTGACTTCC TCCAGCATAT TATTCTTCCA
ACCATTGTTC TTACTATCGT AAGTTCCGTC GGTTACCACC TGTCTCAGCG TACGTACCTG
CTTGACGAGA TGCACGCAGA CTACGTTCGT ACTGCTCGCG CAAAGGGACT TACTCGCAAG
AAGGCAATTC GCAAACACGC CCTTCGTGTC TCTTTGATTC CAACTGCTGT TTCAGTTGCG
TTCTCACTTG CAGGTATCTT TACTGGTGCT GTTATGACCG AGAAGGTCTT TGCAATTCAC
GGTCTTGGTG AGTACTTTAT TAACTGTATT AACAACAACA ATATTCATGG TGCAGTTGCA
GTTGCAGCTT TCTCTGGTGC AATGACTCTT GTTGGTGCTC TTTTGGCTGA TCTCTTTGCT
GCTGCTCTTG ATCCACGAAT TAAGATGAGC TAA
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| Protein sequence | MARFVWYVTK RILSYIVMIF VATSLTFFLA SAFMNPRSNL EQRTPRPPQE SIEANLNRAN
LNDKTPVIER YQIWITNLFT KFDLGMTPTG DSVNREMSSK FMASIELMTP ATILSVVIGV
SLGVYTAQRQ YQWQDRFFSG VASVLLVIPT VVMAILIVFA AIEINARAGS RIFYVTDLSS
GDTGNFFTWL IDFLQHIILP TIVLTIVSSV GYHLSQRTYL LDEMHADYVR TARAKGLTRK
KAIRKHALRV SLIPTAVSVA FSLAGIFTGA VMTEKVFAIH GLGEYFINCI NNNNIHGAVA
VAAFSGAMTL VGALLADLFA AALDPRIKMS
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