| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0868 |
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| Symbol | |
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| ID | 8413734 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | - |
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| Start bp | 962876 |
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| End bp | 963418 |
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| Gene Length | 543 bp |
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| Protein Length | 180 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 645022451 |
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| Product | peptide deformylase |
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| Protein accession | YP_003179888 |
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| Protein GI | 257784671 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
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| TIGRFAM ID | [TIGR00079] peptide deformylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.226218 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.184037 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGTTCTG AAATTGATGA TATGGTGCTT TGGCCAGACC CTCGTCTGAG CCAAAAGTGC
GAAGAAATTG ACGATATTAA CGACGATGTT CGCAAGATGG CTGAGCATAT GCTTAAAGTT
ATGTATGCCA CCGACGGCGT TGGTCTAGCT GGTCCTCAGA TTGGCTATAT GAAGCGCATG
GTAGTCATTG ACGTTGATTA CCCAAACGGT CAAGAAAACC CTTTTGTGCT CATTAATCCA
GAGATTAAAG TTGCGGACGG TGAACCTCGT GTGTATGAAG AGGGCTGTCT TTCATTCCCA
GGCATTACCG TTCCTGTTAC ACGTCCAAGC CACGTTGTCG TTCACGCATA TAACCTTGAC
GGTGATTTGA TGCGCTATGA GGCAGAAGGA GACCTTTTTG CCGTTTGTTT GCAGCATGAG
ATTGACCACA TTAACGGAGT AACTATGCCT GATCACTTGG GACCAGGCGC CCGTATGGAG
ACATTGCGAG AGTATAAAGA AGCGCTGGCT TCTGGCGCTC GCCCTGGTCA GACAGACTAT
TAG
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| Protein sequence | MSSEIDDMVL WPDPRLSQKC EEIDDINDDV RKMAEHMLKV MYATDGVGLA GPQIGYMKRM
VVIDVDYPNG QENPFVLINP EIKVADGEPR VYEEGCLSFP GITVPVTRPS HVVVHAYNLD
GDLMRYEAEG DLFAVCLQHE IDHINGVTMP DHLGPGARME TLREYKEALA SGARPGQTDY
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