| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0732 |
|---|
| Symbol | |
|---|
| ID | 8413596 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Atopobium parvulum DSM 20469 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013203 |
|---|
| Strand | + |
|---|
| Start bp | 810856 |
|---|
| End bp | 812004 |
|---|
| Gene Length | 1149 bp |
|---|
| Protein Length | 382 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 645022313 |
|---|
| Product | aminotransferase class V |
|---|
| Protein accession | YP_003179752 |
|---|
| Protein GI | 257784535 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1104] Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0224667 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.758869 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATTACG TTTACCTAGA CTATGCAGCT TCAGCACCAA TGCGTACAGA AGCGCTTTAT
GCTGAGAAAA CCTATGAGGC TTCACCTATT GCGGGGGTGA ACCCAAACTC TTTGCACTCA
CTTGGTCGTC AAGCGGCACG AGAGCTTGAT AGTGCTCGAA GCGTTATTGC AAACGCTGTG
GGTGGCAAGT TTAGATCTCC TGACGTAATT TTTTGCTCTG GTGGAACTGA GGGCAATAAC
CTCTCTGTTC TTGGTATGGC AGAAGGTATT CGCAACAAGG ATCATAAACG CAACGTGGTG
GTTTTCTCGG CAATTGAACA TGATTCTGTT TTGGATCTTG CACCTGTTCT TCGCGAGAAG
GGTTTTGAAG TAAGAATTGT TCAACCTAAC CGTCAGGGAA AGATTGAAGG TTCTGTACTT
GAAGGTCTTT TGGACCAGTC GGTGGCTCTT GTTTCAGTTA TGTATGCCAA CAATGAAACG
GGTGTTATTC AGCCAGTTGC TGAGCTTGCT CGCATTACTC ATAGGGCGGG CGCACTTTTC
CACACTGATG CTGTTCAAGC GTTTGGTCGT ATTTGTCTTG AAGTGACAGA CGTAGATGCT
CTAACTATTG CTGCCCATAA GATTGGTGGC CCTCTTGGTA TTGCTGCTGT GCTTATGCGC
TCTAAGGTTC CGTTTCAGGC ACAGAGTTAC GGCGGGGGAC AAGAGTCTGG TAGACGTCAT
GGTACTCAGG ATGTTCGAGG CGCTCTAGCC TTTGCTGCAG CAACCAGATG GTGCCAGGAT
AACCTTACAC AAACGCAAGA GATTGTTTCT ATGCGCGCCA ATAAGGTGTA TGAGACTCTC
TGCTCGTCTC CCAAGATTAA GCCAACCACA GCGGCTTACG CTGGCACAGA CCACATGCCT
GGTACAGTAA GTATTATGGT TCCATCAATG GACTCTGAAA CGCTTATTTT AAAGCTTGAT
CAAGCAGGTT ATGAGGTTTC AGCTGGATCC GCCTGTTCTT CAGGTTCTCT TAATGCAAGT
CATGTTCTAA CTGCAATGGG AATCTCAAGG AACGAGGCAC TAGGTAGCTT ACGCATTACT
TTTGACGAGC GCGTTTCTGA GAGTGATCTT AATGCCTTCT GTACAACTTT GCTGCGTATT
GTTGGATAA
|
|---|
| Protein sequence | MNYVYLDYAA SAPMRTEALY AEKTYEASPI AGVNPNSLHS LGRQAARELD SARSVIANAV
GGKFRSPDVI FCSGGTEGNN LSVLGMAEGI RNKDHKRNVV VFSAIEHDSV LDLAPVLREK
GFEVRIVQPN RQGKIEGSVL EGLLDQSVAL VSVMYANNET GVIQPVAELA RITHRAGALF
HTDAVQAFGR ICLEVTDVDA LTIAAHKIGG PLGIAAVLMR SKVPFQAQSY GGGQESGRRH
GTQDVRGALA FAAATRWCQD NLTQTQEIVS MRANKVYETL CSSPKIKPTT AAYAGTDHMP
GTVSIMVPSM DSETLILKLD QAGYEVSAGS ACSSGSLNAS HVLTAMGISR NEALGSLRIT
FDERVSESDL NAFCTTLLRI VG
|
|---|
| |