| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0712 |
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| Symbol | |
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| ID | 8413573 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | + |
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| Start bp | 790209 |
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| End bp | 791579 |
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| Gene Length | 1371 bp |
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| Protein Length | 456 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 645022290 |
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| Product | peptidase M50 |
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| Protein accession | YP_003179732 |
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| Protein GI | 257784515 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0750] Predicted membrane-associated Zn-dependent proteases 1 |
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| TIGRFAM ID | [TIGR00054] RIP metalloprotease RseP |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.41926 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.0000525349 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGAATTTGT TAGCCATTCT TTCACCAATT TTTTGGGGAT TGCTTGTTCT CTCGCTTCTT
GTATTTGTTC ACGAGGCTGG TCATTATGGC ATGGCTCGTC TGTGTGGCGT TCGTGTTACT
GAGTTTTTCC TGGGCATGCC GTTCAGGTAT AAGCTTTCTC ACAAGAGCAA GAAATACGGA
ACCGAGGTTG GAGTAACACC GCTTCTTTTT GGCGGCTATA CTCGTATCTG CGGCATGGAA
GGTGAGCTTG ACGAGCTATT GCCGCAGGCT CTGATGAGCG TTCAAGAGGC AGGTATGCTT
GAGGTTGGCG CTCTTGCTGC AAAACTAAAC TGCGAGGATG AACGTGCATT TAGCCTGCTG
TACACTCTTG CAGATTGGGG CTCTATTGAG CTTGTTAAAG AGTCAGAATC AGAGGAGCTG
GCTCACACTG TGTTCCAGAC CCTTGCACGA GATGCTGAAC TTCGCTGTGA GTATGACCGT
GGTCATAATT TTGAGTTGGA AGGCTCAACT GCAGCGGGAG AGCCTCGTGT TCCGCAAATG
TCTACAGAGG AATTTTTTGC TCAAGAGAAG GCTCATACCT ATGTCGGCGT AAATGTCCCC
AAACGCCTGC TTATGATCTT GGGTGGACCC TTGGTCAACA TTGCGCTTGC TTTTTTATTA
GTTGTTGGTT CTTTGATGTT TGTTGGTGTT CCTACCGCTC AAAATAAGGC ACAGTTGGGG
TCTGTTGAGT CAAACTCTTT AGCTGCTATT TCAGGTCTTA ATCCGGGAGA TACCATTCTT
ACCTTTAACG GAGTAGAGGT ACATACCTGG GAAGAACTCA CTGTAGCTAT TAAAGAAGCA
ATGTCTGCTG ATGGAAAGGA TATTCCTGTC ACCTATGATC GTGGTGGCAT TCAGCTTGAA
ACTACAATCA AACCTGTTTT GCGTCCTGAC GATAAAATCA TTGGCGTGTC ACCTGTGATG
ATCACGTATC ACTTTTCGTT TATTGATGCA TCTGCTGCAG CTGTATCGTA TGCCGCACAG
GTTGGTCAAT TTGCTCTAAG ATTGCTCATT CCCACACAGA CTATGGAAGT TCTCAATCAG
TCATCTTCTG TTGTAGGAAT TTCTGTTATG GCTTCAAAAG CTGCGGCAGA GGGTTTCTCT
ACCCTTATTA TGCTAGTAGC AGCTATTTCT ATGTCTCTTG GGTTTATGAA TCTTTTGCCC
ATTCCACCTC TTGATGGTGG AAAGATTCTG ATTGAGGTTA TTCAGATTAT TGTTAGAAAG
CCACTGTCTA TCAAAGTTCA AAATATTTTG TCTTATATTG GACTGGCATT TTTCCTGTTT
GTATTTGTTG TTGCACTTCG AAACGATATT CTTCATTTAC TTTTTAGGTA G
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| Protein sequence | MNLLAILSPI FWGLLVLSLL VFVHEAGHYG MARLCGVRVT EFFLGMPFRY KLSHKSKKYG
TEVGVTPLLF GGYTRICGME GELDELLPQA LMSVQEAGML EVGALAAKLN CEDERAFSLL
YTLADWGSIE LVKESESEEL AHTVFQTLAR DAELRCEYDR GHNFELEGST AAGEPRVPQM
STEEFFAQEK AHTYVGVNVP KRLLMILGGP LVNIALAFLL VVGSLMFVGV PTAQNKAQLG
SVESNSLAAI SGLNPGDTIL TFNGVEVHTW EELTVAIKEA MSADGKDIPV TYDRGGIQLE
TTIKPVLRPD DKIIGVSPVM ITYHFSFIDA SAAAVSYAAQ VGQFALRLLI PTQTMEVLNQ
SSSVVGISVM ASKAAAEGFS TLIMLVAAIS MSLGFMNLLP IPPLDGGKIL IEVIQIIVRK
PLSIKVQNIL SYIGLAFFLF VFVVALRNDI LHLLFR
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