| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0669 |
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| Symbol | |
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| ID | 8413530 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | + |
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| Start bp | 746357 |
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| End bp | 747760 |
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| Gene Length | 1404 bp |
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| Protein Length | 467 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 645022247 |
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| Product | Tetratricopeptide domain protein |
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| Protein accession | YP_003179689 |
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| Protein GI | 257784472 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.774864 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAATCAAC AGGCATTTGA GTTAGGTAAA TCTGCATATG ATCAGGGCGA CTGGTTTGTA
GCTATCAGCC AGCTTGATAT GGCTAAAGAG CCAGGTGAGG TAAACGGTCA GATTGACCAT
CTTCTTGGCA ATGCTTACAT GAAGCTTGGA CAGTTTGATT CTGCCGCTTC TGCGTATCAG
TCCGCACTTG CCGATGCATC ATACGGCAAG GTTGGCGCTC TTTCTACTAA TCAGGGTCGT
GCTCTTCTAG CTGCTGGTAG GGTACAGGAG GCAATTGCTT CTCTCACTAA CGCTGTTCAG
GATGTCTCTT ATGCAACTCC TTACAAGGCA CAGCTTGCCC TTGGCTCTGC TTACGAGAAA
ATTGGTGATG TTCGCAACGC TGGTATTGCT TACAGAAACG CTGCAGTAGA CGAGAAGAAC
CCTAATCCTT CATCTGCTCT TTGTAGTCTT GGCGCATGCT TTATGGGTCT GAACAGACCT
GTTGATGCAG TTGAGGCATA TCGCACTGCT CTTGATTTTG CTAATCCTTT AGAGAACTCT
AATAAGATTT ACGCAGATCT TGGCCTTGCT TACGTTGCAG CTAATCGTAT GTCTGAGGCA
GTTGATGCTT TTACGCACGC TACTACAGAT GGTACCTTTG CCTTGTCTGA TCAGCAGCAG
TCTGCTTTTG ATGCTGCTCG TAAGGCTATT ACCGCAATGA GTTCTGGCAA ACCATCTGAG
ACTGATGCTT TCCTTCAGGC AGCTGGTTAT GGCTCCTACG ATCCACTTGA TCCTACTGGT
ATGTCTGGTG AGCTCATTCC TTCCGCAGAA GACACTGGTT TCTTCCAAAT TACTGAGCAG
GAGATTATTG AGCAGGACAA GAAGGACAAA AAGATTAGGC GTAAGCACCG TCACACTGGA
CTTAAGGTTT TCATTACCAT TCTTATTTTA CTTATCCTGG CAGTTGCTGG TGCTGGTTAT
GCTTATTATC GTGGCTATGG ATGGCCAACC CAGCAGTCTG TTGTTCAAGA TATTTTCAAT
GCTAAGGCAC AGGGTACCGA TATTGGTCGC TATGTCTCTA GTTCTGTTTC TAGCACTACG
CTCCAGCAGA TTTCTAACAG CCTGCCATCA AGTTCTACTG TTACCATCAA CGGTGTTGAC
CAGAGTATGA CTCATTCAAC GGTAAACGCT TCTGTCAGTC TTTCTAATGG CGGAAACGTT
GACTATACCA TTGAACTTGT TCGTGATGGT ATTGGTTGGA AGGTTGCAAG CGTAACCACT
TCATATGTAA GCCAGAATAA TCAGAACTCC GGTACAACTT CTGGTACCAA CAGTTCTAAT
ACAGGAACTA CCTCTGGAAC TAATGGATCT AACTCTTCAA ATTCCTCTAA TAGTTCCTCC
AACTCTTCAA AGTCTGGCAA CTAA
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| Protein sequence | MNQQAFELGK SAYDQGDWFV AISQLDMAKE PGEVNGQIDH LLGNAYMKLG QFDSAASAYQ
SALADASYGK VGALSTNQGR ALLAAGRVQE AIASLTNAVQ DVSYATPYKA QLALGSAYEK
IGDVRNAGIA YRNAAVDEKN PNPSSALCSL GACFMGLNRP VDAVEAYRTA LDFANPLENS
NKIYADLGLA YVAANRMSEA VDAFTHATTD GTFALSDQQQ SAFDAARKAI TAMSSGKPSE
TDAFLQAAGY GSYDPLDPTG MSGELIPSAE DTGFFQITEQ EIIEQDKKDK KIRRKHRHTG
LKVFITILIL LILAVAGAGY AYYRGYGWPT QQSVVQDIFN AKAQGTDIGR YVSSSVSSTT
LQQISNSLPS SSTVTINGVD QSMTHSTVNA SVSLSNGGNV DYTIELVRDG IGWKVASVTT
SYVSQNNQNS GTTSGTNSSN TGTTSGTNGS NSSNSSNSSS NSSKSGN
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