Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Apar_0662 |
Symbol | |
ID | 8413522 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Atopobium parvulum DSM 20469 |
Kingdom | Bacteria |
Replicon accession | NC_013203 |
Strand | - |
Start bp | 737597 |
End bp | 738739 |
Gene Length | 1143 bp |
Protein Length | 380 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 645022239 |
Product | chorismate synthase |
Protein accession | YP_003179682 |
Protein GI | 257784465 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0082] Chorismate synthase |
TIGRFAM ID | [TIGR00033] chorismate synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGACCT CAACTTTTGG GACAACAGTA AAAGTATCTA TTTTTGGTGA GTCTCATGCT CCAAAAATCG GCTGCACAAT TGAAGGTTTA CCTGCAGGGT TTACGGTTGA CTTGCATGAG CTTAAGACAT TTCTTCAAAG AAGATCTCCG TCGCATCCGT GGGATACTCC GCGTAAAGAA ATTGACAATC CGAAGTTCGT CTCTGGAATT TCAGCAAAGG GTATTCTGGA TGGTTTCCCA CTCACAGCGG AGTTGCCTAA CAACAATGTT CGGCAAAAAG ATTACACAGC TACAAAGCTT GTTCCACGTC CAGGACATGC CGATTTTTCT GCCTGGGCAA AATGGGGAAA CTCCTACAAA CAAACGGGTG GAGGACATTT TTCTGCTCGC CTCACAGCCC CTCTCTGCAT TGCGGGAGGC ATAGCGCTCC AGATTTTACA CGCTCAGGGC ATCACTATTG CAGCTCACGT GCTCAAAATA AAGAACATAA ATGATACTCC TTTTAAGCTC ATAGACAACT CCGTTGAAGC CAATAAGCTG CTTGCTCTCC AAATGAATCA GCTGCTACAA GCCGCTCCTC AAGAACTTCC TTTCCTCGAT GCTCAGACTG GCGAGAAAAC CCGTGCACTC CTCACACAAC TGCGCTCCGA GAAAAATACT GTTGGTGGCA TCATAGAGTG CGTAGCAACA GGAGTTCCTG CAGGCATTGG TTGCCCTCAT TTTCAAGGAC TTGAAAATAC AATCTCCGCC GCAGTCTTTG GTGTTCCCGC TGTTAAAGCC ATAGAATTTG GCAGCGGTAT GAACGTTGCA AATTTACTTG GCTCTGAAAA CAACGATGCC TACGAGGTAC GCGACGGCTC TGTTGTACCA ACCACCAATC ACGCTGGAGG CATTCTGGGC GGCATCTCAA CGGGCGCTCC CATCTGGTTC AGATGCGCAC TTAAGCCTAT ATCAAGCATT GGGCTTTCTC AACATTCAGT TAACCTTCAA ACTATGGAAT CAGAGCAGCT TGTGGTCCAG GGCAGACATG ACGTAACTGC AGTCTTACGT GCTGTGCCTT GCGTTGAGAG CGCGTTTGCA CTAGCACTTC TCGACACTTT GTATTCCTGG CCCTCTGAGC AGAACGGATA TCACAATGAC TAA
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Protein sequence | MMTSTFGTTV KVSIFGESHA PKIGCTIEGL PAGFTVDLHE LKTFLQRRSP SHPWDTPRKE IDNPKFVSGI SAKGILDGFP LTAELPNNNV RQKDYTATKL VPRPGHADFS AWAKWGNSYK QTGGGHFSAR LTAPLCIAGG IALQILHAQG ITIAAHVLKI KNINDTPFKL IDNSVEANKL LALQMNQLLQ AAPQELPFLD AQTGEKTRAL LTQLRSEKNT VGGIIECVAT GVPAGIGCPH FQGLENTISA AVFGVPAVKA IEFGSGMNVA NLLGSENNDA YEVRDGSVVP TTNHAGGILG GISTGAPIWF RCALKPISSI GLSQHSVNLQ TMESEQLVVQ GRHDVTAVLR AVPCVESAFA LALLDTLYSW PSEQNGYHND
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