Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Apar_0580 |
Symbol | |
ID | 8413434 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Atopobium parvulum DSM 20469 |
Kingdom | Bacteria |
Replicon accession | NC_013203 |
Strand | + |
Start bp | 652253 |
End bp | 653137 |
Gene Length | 885 bp |
Protein Length | 294 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 645022152 |
Product | major capsid protein HK97 |
Protein accession | YP_003179601 |
Protein GI | 257784384 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.0637425 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAAACG GTATTTTAAC TACTTCTGCA ACGCTCCCAG GAGACCTCTC TTCAGAGATT TTTGCAAATG TCCAGGAGCA GTCTGCTGTT ATGCAGCTTG CAACTCCAAT TGAGCTTCCT GGACGAGGCA TGACAGTTCC AGTTGTAACT GGTGACCCAG AGGCATCTTT TGTCAATGAG GGCGAAGAGA TTAAAGTCTC TAATTCCACT CTCGCAGTTA AGGAAATGAA GCCTTATAAG CTCTCTGTTA TTGAGCTCTT CTCTAATGAG TTCAAGGACA ATTATGAGGC TATCTTCGCA GAGCTTCAGA ACCGTCTTCC AGGTGCTATT GGTCGTAAAG TTGACTCCAC TATCCTCTAT GGCACTACTC CAGGCACTGG CTTTGATACT CTTGCAGATA CTGATTCAGT AGACCTTTCT GCTAAGGCTT ACGACGGCTT TGTAGATGCA CTTGAGAAAG TAGCAACAGC CAACGGCGAT CTTAACGGTT GGATTTTGTC CCCTAAGGCA CGCACTCTGC TCCTTAAGGC AAAAGACAAC CAACAGCGTC CTCTCTTTAT TACTAACCCT GCTGTAGAGG GTAAGGATGG CGGTTCTTCT GTTCTCGCTA TTCCATCTCT CTTCTCTCGT GCGGCTTACC AGGCAAAGAA CCAGGGTAAG ACACCTGAGC TTGTCGGTGC TGGTGGAGAC TGGACTGGTG CTCGTTTTGG TCTTGTCAAA GACATTACTG TTTCTTTGGC TGATCAGGCG ACTATCAATG CTGGTGGTAC TCAGATGAAC CTCTATCAGC GTGATATGTT TGCTCTGAAG TGCACCTTTA TGTTTGGCTT TGTCGTACGT GATAAAAAGC AATTCGTCCG TCTTGCAAAC GGTACAGCTG CTTAA
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Protein sequence | MANGILTTSA TLPGDLSSEI FANVQEQSAV MQLATPIELP GRGMTVPVVT GDPEASFVNE GEEIKVSNST LAVKEMKPYK LSVIELFSNE FKDNYEAIFA ELQNRLPGAI GRKVDSTILY GTTPGTGFDT LADTDSVDLS AKAYDGFVDA LEKVATANGD LNGWILSPKA RTLLLKAKDN QQRPLFITNP AVEGKDGGSS VLAIPSLFSR AAYQAKNQGK TPELVGAGGD WTGARFGLVK DITVSLADQA TINAGGTQMN LYQRDMFALK CTFMFGFVVR DKKQFVRLAN GTAA
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