| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0430 |
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| Symbol | |
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| ID | 8413279 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | + |
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| Start bp | 497392 |
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| End bp | 498741 |
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| Gene Length | 1350 bp |
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| Protein Length | 449 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 645021998 |
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| Product | polar amino acid ABC transporter, inner membrane subunit |
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| Protein accession | YP_003179452 |
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| Protein GI | 257784235 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
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| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.100929 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCCTCAGA ATATGGCTCA TGATTCTGCT GAGTCAAAGT GTCCGCATGT ACGCGTGTAT
TCCTCTTTGT TTGTAGTATT TCTCGCCACG TTTCTTTTGA GTGGATTGTT CTTCATGAGC
TTGAGCGTGT TTTCTGCTGA GAGTGCGTTT GCTCTCACCA CAAACAAGGC AACAGCTAAG
TCAAATCAGA CGGAAGGTAA TGGTGTTATT GGTGGCAAAG AGACACGCTT GACCTGGGAG
GGAACAGTTG AGGATGAGCA GATATCTCAG CTGACTTTGC AGCTTCCTGA GGGCTCTGAT
TTGCAGAGTG CAACTACTAA GGTAACCGTT CTTTCAGGTC TTACGCGCGA GAAGATCGAA
GCAACTGCAA GCGTGCAAGG AACGCAGGTT GTCATTTCTT TTGCAACACC TGTAGATGCT
CAAAAGCTTA TTCGCGTTGA GATTTCCGGT ATGAAGTTTC CTTCTGACGG AGGCGCGTAC
ACTGTTGAAG GAACCTATAC CACTGAGCAG GGGACTCAAA AGCTTGTCTC TTCTCCTGAA
ATCACCGTTA TTTCTAATAC ACCTGTTCAG GCCATTGTAA ATTGGCTTGA TGTTCAGCCT
TGGGTTGAAG CATGGAACTC AAACCACTTT TTGGGTATGT TCTTAAAACC TCAGCTGATT
GTCTCCTCAG TTGTGATGTT ATTCCCGGGA TGGCTGGTTT GTCTGGCAAT TGTAATTTGC
GCCTATCCTG TGGCCATTGT GCTAGGAATG GGATTTGCAC TGCTTAAGAT TTCTAAGAAT
CCACTCCTGC GTGCCCTAGC GGTGGTATAT ATTAACCTTT TGCGTGGTAC CCCATTTTTC
CTGCAGATTT ATATTTTGTT CTTTGGTCTT CCCATGCTGA ACATCAATTT GGACACCAAT
CTGCTTGGCT TTATTGTAGT GGCCATTAAT TCTTCTGCCT ATCTTTCAGA GATTTTCCGT
GCTGGCATTC AGTCAATTCC TCAGGGTCAG TACGAGGCAG CAAGTTCTCT TGGTATGAAT
CGCTTCCAAA CCATGACATT TATCATCATT CCTCAAACTA TTCGCCGAGT GATTCCACCT
CTAACCAGTG ATTTTATTAC TTCTTACAAA GATACTTCGC TACTTTCTTC TGTAGGTGTT
ATGGAGCTGA TGATGTTTGC TAAAAACCTC ACCACATCAA CCGGAAACAT GACTCCATAC
ATGACAGCGG CTCTGTTCTA TTTGGCAATT ACACTGCCAC TTATTAAGGT GGTTGGAAGT
ATCGAGAAAC GCATGGAGCA GTCAGAAACA GGTCAAACCG CAAGTACTAA AACTAGTAAA
ACTCAAGCTA TTTCTAAGGA GGAAAACTAA
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| Protein sequence | MPQNMAHDSA ESKCPHVRVY SSLFVVFLAT FLLSGLFFMS LSVFSAESAF ALTTNKATAK
SNQTEGNGVI GGKETRLTWE GTVEDEQISQ LTLQLPEGSD LQSATTKVTV LSGLTREKIE
ATASVQGTQV VISFATPVDA QKLIRVEISG MKFPSDGGAY TVEGTYTTEQ GTQKLVSSPE
ITVISNTPVQ AIVNWLDVQP WVEAWNSNHF LGMFLKPQLI VSSVVMLFPG WLVCLAIVIC
AYPVAIVLGM GFALLKISKN PLLRALAVVY INLLRGTPFF LQIYILFFGL PMLNINLDTN
LLGFIVVAIN SSAYLSEIFR AGIQSIPQGQ YEAASSLGMN RFQTMTFIII PQTIRRVIPP
LTSDFITSYK DTSLLSSVGV MELMMFAKNL TTSTGNMTPY MTAALFYLAI TLPLIKVVGS
IEKRMEQSET GQTASTKTSK TQAISKEEN
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