| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0155 |
|---|
| Symbol | |
|---|
| ID | 8413001 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Atopobium parvulum DSM 20469 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013203 |
|---|
| Strand | + |
|---|
| Start bp | 179005 |
|---|
| End bp | 180267 |
|---|
| Gene Length | 1263 bp |
|---|
| Protein Length | 420 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 645021725 |
|---|
| Product | peptidase T |
|---|
| Protein accession | YP_003179182 |
|---|
| Protein GI | 257783965 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2195] Di- and tripeptidases |
|---|
| TIGRFAM ID | [TIGR01882] peptidase T |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGAAA CTATGTCTAA CCAGCTCCCT GATGTTGCCG AGCGCTTCAT GCGCTACGTG
CAGGTTGATT CCCAGTCTAA TCCTGAGAAC GATACCGTTA CGCCTTCCAC GCCTGCTCAG
CACGAGATGG CTCGCTACTT GGGCGAAGAG CTCAAGGCGT TGGGCTGCAC TGATGTCACT
GTCGACGAGC ATGCTTACGT TACCGGCACT TTCGCCGCAT CTAAGGGCGC TGAATCGGCT
CCTGCGCTGA TGCTTTGCTC GCACCTGGAT TCCGTTATTG ATGCGCCTGC TTCGGGCATT
AAGCCGCACG TCGTCTATTA CGAGGGTGGT GACTTGGTTG CTGGCGTTGT TAACGGTAAG
ACCATCGCTA CTACACAGGA ACAGGTTCCT GACCTCAAGG ATTTTGTGGG CATGGACATC
ATCTGCTCCG ACGGCTCCAC GCTGCTTTCC GCTGACGATA AGGCCGGTGT GGCAGAGATT
TGCGCCTTGC TCAAACGCCT GGGCGACAAC CCTGAGCTTG CGCATCCAAC ACTTAAGATT
GCATTTGTCC CTGACGAGGA AATCGGTCAT GGCGCAAGTC TGCTTGACCT AGAAAAACTC
GGCGCAGCTT ACGGCTACAC TGTTGATGGT GAGGCGCTGG GAGAATTTAA CTACGAGTGC
TTCAATGCAG CTCATGCCGA TGTCTATTTC AAGGGTGTTA TGGTTCACCC TGGCAGCGCC
AAGGATGTCA TGGTCAACGC GATCACCGTT GCGTCTGAGT TCCAGCAAAT GGTTCCCGCC
TTCGAGCGTC CCGAGCACAC CGAGGGTTAC GAGGGCTTCT ACCATCCAAT TGCCATCGAG
GGTTCCGCAT CTGAGGTTAA GCTCAGCTAC ATTGTCCGCG ATCACGATTC CCAGATTTTT
GCCAATCGTC AGCAGGTTCT GCAGGATATT GCTGCGTTTC TGAACAAGCG CTATGGCGAG
AATACCGTCC GCGTTGAGAT TCATCAGGAG TATCGCAACA TGGCCGAGAA GTTTGATGGC
TATGAGTTTC TGATTGATTA TGCTCTTGAG GCAAACCGTG AGGTTGGTAT TGAGCCTAAG
CCTGTTGCTG CTCGCGGTGG TACCGATGGT GCTCAGCTTA CGTTCCGTGG TCTGCCATGC
CCCAACATTG CTACCGGTGG ATACAATGCT CACTCTGTGC GCGAGTTTAT CCCCGTGCCA
AGCCTCAAGG TCACCGTTGA CCTTTTGGAG AAGCTTGTCG CTAAGTTTGC TACCCGCGGC
TAA
|
|---|
| Protein sequence | MPETMSNQLP DVAERFMRYV QVDSQSNPEN DTVTPSTPAQ HEMARYLGEE LKALGCTDVT
VDEHAYVTGT FAASKGAESA PALMLCSHLD SVIDAPASGI KPHVVYYEGG DLVAGVVNGK
TIATTQEQVP DLKDFVGMDI ICSDGSTLLS ADDKAGVAEI CALLKRLGDN PELAHPTLKI
AFVPDEEIGH GASLLDLEKL GAAYGYTVDG EALGEFNYEC FNAAHADVYF KGVMVHPGSA
KDVMVNAITV ASEFQQMVPA FERPEHTEGY EGFYHPIAIE GSASEVKLSY IVRDHDSQIF
ANRQQVLQDI AAFLNKRYGE NTVRVEIHQE YRNMAEKFDG YEFLIDYALE ANREVGIEPK
PVAARGGTDG AQLTFRGLPC PNIATGGYNA HSVREFIPVP SLKVTVDLLE KLVAKFATRG
|
|---|
| |