Gene Apar_0134 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagApar_0134 
Symbol 
ID8412980 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAtopobium parvulum DSM 20469 
KingdomBacteria 
Replicon accessionNC_013203 
Strand+ 
Start bp153037 
End bp153678 
Gene Length642 bp 
Protein Length213 aa 
Translation table11 
GC content49% 
IMG OID645021704 
Productdeoxyribose-phosphate aldolase 
Protein accessionYP_003179161 
Protein GI257783944 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG0274] Deoxyribose-phosphate aldolase 
TIGRFAM ID[TIGR00126] deoxyribose-phosphate aldolase 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGAAATCA ACGGCCTTAT CGACCATACA AATTTGAAGC AAAACGCAAC TGCTGAGGAC 
ATTAAGAAAC TTTGTGCCGA AGCAAAACAG TATAAGTTTG CAACTGTCGC TATCAATTCT 
TGCTGGGTTT CTTTAGCTCA CGCCGAGCTC GAGGGCTCTG GAGTTGGTAT TACTTCCTGT 
GTCGGTTTCC CTCTGGGCGC AGCTTCAACT GCGGCTAAGG TCGCTGAGGC TAAGCAGAGT 
GTTGCCGACG GTACCACCGA GATTGATATG GTCATCAATG GTGGTCATCT GGTCGCGGGT 
GATGACGACT ATGTTATCTC TGATATCAAA GCTGTTGTAG AGGCTGCAGG CTCTGTTCCC 
GTTAAGGTAA TCCTTGAGTG CTGCTTGCTT GATGACGAGC AGATTGTTCG TGCCTGCAAG 
GATTGTATGG CTGCTGGAGC TGCTTTTGTT AAGACGAGCA CTGGCTTTAG CACAGGTGGA 
GCAACTGTTC ACGATGTTGC TCTAATGAAG CAAACTGTTG GTGATACCTG CAAGGTCAAA 
GCTGCCGGTG GTATTCACAA TAAAGCTGAT GCTGAGGCAA TGGTTGCGGC TGGCGCTGAT 
CGTTTGGGAT GCTCCAGCGG AATTGCTATT GTCACCGAGT AG
 
Protein sequence
MEINGLIDHT NLKQNATAED IKKLCAEAKQ YKFATVAINS CWVSLAHAEL EGSGVGITSC 
VGFPLGAAST AAKVAEAKQS VADGTTEIDM VINGGHLVAG DDDYVISDIK AVVEAAGSVP 
VKVILECCLL DDEQIVRACK DCMAAGAAFV KTSTGFSTGG ATVHDVALMK QTVGDTCKVK 
AAGGIHNKAD AEAMVAAGAD RLGCSSGIAI VTE