| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0079 |
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| Symbol | |
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| ID | 8412922 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | + |
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| Start bp | 89282 |
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| End bp | 90721 |
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| Gene Length | 1440 bp |
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| Protein Length | 479 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 645021646 |
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| Product | PTS system, lactose/cellobiose family IIC subunit |
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| Protein accession | YP_003179106 |
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| Protein GI | 257783889 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1455] Phosphotransferase system cellobiose-specific component IIC |
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| TIGRFAM ID | [TIGR00410] PTS system, lactose/cellobiose family IIC component |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAAAAG ATAATGGCCA AGCATCGTTT CTAGATAAAT TTGCAGAAGT TTCTGCAAAA
GTAGGCAATC AAGTTCACTT GAGAAGCCTA CGCGATGCAT TCGCAACTGT CAGCCCAATT
TACATTTTGG CTGGTATTGC AGTACTGATC AACAACGTTC TGTTCCCACT CATCTTTGCT
AATGATCCAG TCACCTTGGC TAATTTCAAG GTTTGGGGTG CAGCGATTGC TCAGGGAACT
CTGAGTTTCT CGGCAGTTAT TCTTGCAGGC ATCATTGGTT ATTGCCTTGC TCGTAATAAG
CGTTTTGAAA ACGCAATTTC TTGCGTTGTT ATTGGCATTG CTGCTCTTAT TATCATGATG
CCTCAGAGCA TTGTTGCCAC CGCAGGCGCT GTTCTTCACG CAACTAACGC TGCTAACGCA
GCTGCTGCAG CAGTAACACT TCCTGTGGCT GAGGTTGCTA AGCTTCTGCC AAATGACTAT
GCAGTCACTG GCGTCGATGT AACAGGCGCT TTTTCCTCCT CCTTCACTGG TACTAACGGT
CTGTTTGGTG CAATCATTAT TGGCCTGCTT TCGACCACAA TTTTCATTAA GCTCTCTAGC
GTTAAACAGC TGAAGGTCAA CCTTGGTGAG GGTGTTCCAC CAGCGGTTGC AGATTCTTTT
AACACCATGA TTCCTATGAT GTTGACCTTG AGTGTTTTTG GTATTGCTTC TGCTCTTCTT
GCAGTTTGTG CAGGTACTGA CCTTATGACC ATCATTGCAA CAAGCATTTC CGCCCCACTG
AAGGGCCTTA TGAATGCTGG TCCATTTGCT GTCATCGTCA TCTACACCTT TGCAAACCTT
CTCTTCTGCC TTGGTATTCA CCAGTCCACC ATCTCTGGTG TTCTGATTGA GCCAATCCTG
ACCATGCTTA TTGTTGACAA CATGGCAACC TTCGCAGCTG GTCAGCCAAT CCCTCAGGAT
CACTACATGA ACATGCAGAT CATCAACACC TTTGCGCTGA TTGGCGGTTC TGGTTGTACT
CTGATGCTGC TTTTTGACAC CTTTATCTTC TCCAAGAACA AGGCTTCTAA AGACGTTGCG
GCACTTTCTC TTCTCCCAGG TATCTTTAAC ATCAACGAGC CAGTTATTTA TGGTTACCCA
ATTGTCTTTA ACCTTCCTTT GATGATTCCA TTTGTTCTTG TACCAGATTT GTTCATCGGT
CTGACCTACC TGCTCACCAA CCTTGGTTGG ATTAGCCCTT GCGTTGCAAT GGTTCCTTGG
ACCACTCCAG TCTTTTTGAG TGGTTGGTTA GCAACCGGTG GCGACGTTCG TGCTGTTATT
TGGCAGATCG TCGAGGTTCT TCTCGCAATG GCAATTTACC TGCCATTTAT GAAGATCTCC
GAGCGCGCAC AGGTCAAGCA GGCTGAGGCT CTTGCAGAGA AAGCTCAGGA TGCAGAGTAG
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| Protein sequence | MAKDNGQASF LDKFAEVSAK VGNQVHLRSL RDAFATVSPI YILAGIAVLI NNVLFPLIFA
NDPVTLANFK VWGAAIAQGT LSFSAVILAG IIGYCLARNK RFENAISCVV IGIAALIIMM
PQSIVATAGA VLHATNAANA AAAAVTLPVA EVAKLLPNDY AVTGVDVTGA FSSSFTGTNG
LFGAIIIGLL STTIFIKLSS VKQLKVNLGE GVPPAVADSF NTMIPMMLTL SVFGIASALL
AVCAGTDLMT IIATSISAPL KGLMNAGPFA VIVIYTFANL LFCLGIHQST ISGVLIEPIL
TMLIVDNMAT FAAGQPIPQD HYMNMQIINT FALIGGSGCT LMLLFDTFIF SKNKASKDVA
ALSLLPGIFN INEPVIYGYP IVFNLPLMIP FVLVPDLFIG LTYLLTNLGW ISPCVAMVPW
TTPVFLSGWL ATGGDVRAVI WQIVEVLLAM AIYLPFMKIS ERAQVKQAEA LAEKAQDAE
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