Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Amuc_2104 |
Symbol | |
ID | 6273696 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Akkermansia muciniphila ATCC BAA-835 |
Kingdom | Bacteria |
Replicon accession | NC_010655 |
Strand | + |
Start bp | 2558514 |
End bp | 2560115 |
Gene Length | 1602 bp |
Protein Length | 533 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 642614166 |
Product | 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase |
Protein accession | YP_001878694 |
Protein GI | 187736582 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG1165] 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase |
TIGRFAM ID | [TIGR00173] 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 56 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGAATTCCC CCGCATCCTT CGTCAAATCC CTGCTGGCCC AATGCTGCCT GGGCGGCATT TGCGAGTGGG TGGTCTGCCC CGGCGCGCGC AACATGGCGC TGCTCCAGGT GCTGGCTGCC GCGGAGGATC TGGTGAAATG GACTCACTTT GACGAACGGT CCGCCGCCTT CTTTGCGCTG GGCCGCATTC AGGATATAGG GCTGCCCGTG GCCGTGGTCA CTACCTCCGG AACGGCGGCG GCGGAACTGC TCCCCGCCGT GGTGGAGGCC TACTACCAGC GCCGCCCCCT GCTCCTGCTC ACGGCGGACC GTCCGGCGGC CTGCCGGGGT TCCGCCGCTC CCCAGGCCAT CGAACAGGCG GATCTGTTCG GCATTTACGC ACCCACGATT GACCTGGAAA CGCCGGAAAG CCTGCCGGAA GACATTCTGC AAGACTGGGA TTACGCCTCA CCCCTCCATA TCAACGTGTG CCTGCCGGAT CCGGACCCTG CCTGGAACCC CGGCAGCTGC GACCTTTACC CGGCGGAACC TCCGGAGGAA AACGGATTCC GGGGCTCCCT GGCAGAACTG GCCCGGGCCC TGCGCTTCAA ATCGCGCGGC GGGCTGGTGG TCATGATCGG CGGCCTGGAC CCCACGGAAC AAGCCCCGGC CCGGTGGCTG GCCAACGAAC TGAAAGCCCC CGTGGTGGCG GACGCCACCT CCGGACTCCG GGAAGAGCTG GCCCATCTGG CTCTGACGGA CGCAGACGCC CTGCTGAGGG AACACCCGCC CGCCGTCCTG CTCAGATTAG GGGACGTGCC CGTGGCCCGC TTCTGGCGCG ACCTGGAGGA CATTCCAGCC ACGGAAGTCT TCTCCGTCAC CCGCACCGGC TTCTCCGGGC TGGCCCGCCC CTCCTCCGTC GTAACCGGAG ACCTGGAAGC CATTCTGCAT GCGCTGGGGG ATATAGATAC CGTGGGCGAC GTCAACGGCC TGCGCGCCAT GAACAAACGC AGGAAAGCCC TGATGGAGGA ACTGCTCATC ACCTGCCCGG AAAGCGAACA GGCCATGGTG CGCTCCTTCT CCTGCTTTGC CGCGGACGGA GACTGCATTT ACCTGGGCAA CTCCATGCCC GTGCGGTACT GGAACAGCTT CGCCCAGACG TCCATCCCCA CGGAAAACGT CCGCGCCAAC CGGGGCACCA ACGGCATTGA CGGGCAAATC TCCGGTTTTC TGGGGGTCTC CGCCCGGTGT TCCCGCTCCT GGGCTCTCGT GGGCGACCTG ACCGCCATGT ATGATTCCAA TGCCCTGGCA CTCCTTCCCC AACTGGACAG GGGGACCCGC GTCCTCGGCG TCATCAACAA CGGCGGAGGG GGCATCTTCC GCACCCTCCC GGGAGCAGAC GGCCAGCCGG AAACCATGAG GAAGCTGCTT GTACAACCCC ACGCCCATTC CTTCAAAGCC ATTGCGGAAC AATGGGGAAT GCGCTACCTG ACCATCCGCA CGGCGGAGGA CTTCGACCAG CTTGATTCCC TGGAGGAAAA CAGCCAGACG CTTGTAGAGC TCATCCCGGA CAGGGAGCAG ACGGAACAGA TCCGCCTCCG GCTGGCCAAC GCCCAGGTGT AA
|
Protein sequence | MNSPASFVKS LLAQCCLGGI CEWVVCPGAR NMALLQVLAA AEDLVKWTHF DERSAAFFAL GRIQDIGLPV AVVTTSGTAA AELLPAVVEA YYQRRPLLLL TADRPAACRG SAAPQAIEQA DLFGIYAPTI DLETPESLPE DILQDWDYAS PLHINVCLPD PDPAWNPGSC DLYPAEPPEE NGFRGSLAEL ARALRFKSRG GLVVMIGGLD PTEQAPARWL ANELKAPVVA DATSGLREEL AHLALTDADA LLREHPPAVL LRLGDVPVAR FWRDLEDIPA TEVFSVTRTG FSGLARPSSV VTGDLEAILH ALGDIDTVGD VNGLRAMNKR RKALMEELLI TCPESEQAMV RSFSCFAADG DCIYLGNSMP VRYWNSFAQT SIPTENVRAN RGTNGIDGQI SGFLGVSARC SRSWALVGDL TAMYDSNALA LLPQLDRGTR VLGVINNGGG GIFRTLPGAD GQPETMRKLL VQPHAHSFKA IAEQWGMRYL TIRTAEDFDQ LDSLEENSQT LVELIPDREQ TEQIRLRLAN AQV
|
| |