| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_1626 |
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| Symbol | |
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| ID | 6275426 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Akkermansia muciniphila ATCC BAA-835 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010655 |
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| Strand | + |
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| Start bp | 1959219 |
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| End bp | 1961285 |
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| Gene Length | 2067 bp |
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| Protein Length | 688 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 642613686 |
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| Product | RNA polymerase, sigma 70 subunit, RpoD family |
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| Protein accession | YP_001878227 |
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| Protein GI | 187736115 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 58 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCAAAT CCGGTGACCC ATCCCCCTCT TCTCCCAAGA AGACTTCCGC CAACAAAAAA
GCTTCTGAAT CCAAGGAAAA AATAGCGGCC CGGCCCGCCG CAAAAAATTC CAAAACCGCT
CCGAAGGCGG CTCCTGTCAA AAAAAACTCT GCCAAGGCTG CCGCTCCGGC TGCGGAAAAG
GCCGCCGCCA AGCCCGTTGC GGAAAAAAAG GCCCCGGCAA AAAAAGCGTC TCCGGCTTCT
GCCTCCAAGA AGGCGGCGCC GTCCGCCAAA AAGACTCCGG CAAAGGCGCC TGAAGCTGTC
CCTGCCAAGA AAGCTCCAGC CAAGGCTGCG GAGAAGAAGC CGGCTGAGAA GAAGGCCGCC
AAACCTGCCG CGAAGGAGGA AACGCCCAAA AAATTAAGCG AAATACTGGA AGAGGAACGC
AAGAGGGCTG CCAGCCGCAA GATCACGAAT CCGATTGACG CTCCGGAAAT TCAGGAAAAA
ATCCGTGAAC TTATCAAGCT CGCCAAGGAA CAGGGGTATC TGACTTTTGA CGATATTAAT
GACTCCCTTC CCAACGACAT TGTCGATCAG CAGGATTACG AGGCCATCAT GGACCGCCTG
CGCAGCATGG CGTTTGACAT CATTGACGCG TCTGATGTGG ACAGCTACAC GGACCGCACC
CGCATCAGCA CGGAAGAAGA GGACGAAGAG GAAAAGCTCG AAGCCAAGAT GGACATTCTG
GATGATCCCG TCCGCATGTA CCTGAAACAA ATGGGCCAGG TTTCCCTGCT TACCCGTGAA
GAGGAAGTGG CCATTTCCAA GAGAATTGAG GACGCGGAAC AGAACGTCCA GCGCTGTGTG
CACCGCTTCG GTTTCATCGC GAATGCCTAT CTGGACGTAG CCTATCGCCT GCTCGACAAT
GAGGAACGCT TTGACCGCGT TATCCTTGAC AAAAAGATAG ACTCCCGTGA GCGCTATATG
AAAGGGCTGG CCCAGCTCTG CGCCCAGATA CAGCAGACCC ATCAGGACGC ATCCGGTTCC
TTCCGCAAGC TGTACCGCAG CAAGGAGGCG GCCAAGTCCG TCAAGGCCCG CCAGGCCGAA
TTCGACAAAG TTGCCGGCGC TTTGGTGAAG TTCTTCGGTC GCCTGTATTT CAAGCACAAG
GTGATTGAGG ATTTCTGTTC CATGATTGAC GAGGCCCGCG ACCGCGTGCT CCGCATGCAG
AAGAAGGTTG CCCTGGAACC GGACAACAAG GAACTCAAGG AACATCTGGC AGAGCTGGAG
CTTCGCATGT GGATGACTGC GGATGAGATG GGAGATGCCT ACCAGGAACT CCGCAAATGG
CTTCGCGAAG CCCGCAGGGC CAAGGATGAA ATGGTGGAGG CCAATCTGCG CCTGGTCATT
TCCATTGCCA AAAAATATAC CAACCGCGGC CTCTCCTTCC TGGATCTGAT TCAGGAAGGC
AACATGGGCC TGATGAAAGC GGTGGAAAAA TTTGAATACC GCCGCGGCTA CAAATTCTCC
ACCTATGCCA CCTGGTGGAT TCGCCAGGCC ATCACCCGCT CCATTGCAGA CCAGGCCCGC
ACCATCCGCA TTCCCGTGCA CATGATTGAA ACCATCAATA AATTGATGCG CGTGCAAAAG
CAGTTGGTGC AGGAGTACGG TAGGGAACCC ACTCCGGAAG AAATCGCGGA AGAAATCCAT
CTGCCTGTGG AACGCGTGCG TTCCGTTTTG AAAATGGCCC AGCAGCCCAT TTCCCTGCAA
GCCCCCGTGG GGGATTCCGA CGATACCTCC TTTGGTGACT TTATTGAAGA CAAGGCGGCG
GAAAATCCCA TGGAGGAAGC CTCCTTCTCT TTCCTGAAAG AAAAAATCAA GGATGTTCTG
GACACCCTCA CGGATCGTGA ACGCGAAGTT ATTGAACAGC GCTTCGGCCT CCGGGACGGC
AGTCCCCGCA CTCTGGAGGA AGTGGGCCGC CAGTTCAGCG TCACCCGCGA ACGCATTCGC
CAGATTGAAG CCAAAGCCCT CCGCAAGCTG CGCCATCCCA CGCGCATCAG CAAGATCAAG
GGATTCCTGG AAATGACGGA ATCCTAA
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| Protein sequence | MSKSGDPSPS SPKKTSANKK ASESKEKIAA RPAAKNSKTA PKAAPVKKNS AKAAAPAAEK
AAAKPVAEKK APAKKASPAS ASKKAAPSAK KTPAKAPEAV PAKKAPAKAA EKKPAEKKAA
KPAAKEETPK KLSEILEEER KRAASRKITN PIDAPEIQEK IRELIKLAKE QGYLTFDDIN
DSLPNDIVDQ QDYEAIMDRL RSMAFDIIDA SDVDSYTDRT RISTEEEDEE EKLEAKMDIL
DDPVRMYLKQ MGQVSLLTRE EEVAISKRIE DAEQNVQRCV HRFGFIANAY LDVAYRLLDN
EERFDRVILD KKIDSRERYM KGLAQLCAQI QQTHQDASGS FRKLYRSKEA AKSVKARQAE
FDKVAGALVK FFGRLYFKHK VIEDFCSMID EARDRVLRMQ KKVALEPDNK ELKEHLAELE
LRMWMTADEM GDAYQELRKW LREARRAKDE MVEANLRLVI SIAKKYTNRG LSFLDLIQEG
NMGLMKAVEK FEYRRGYKFS TYATWWIRQA ITRSIADQAR TIRIPVHMIE TINKLMRVQK
QLVQEYGREP TPEEIAEEIH LPVERVRSVL KMAQQPISLQ APVGDSDDTS FGDFIEDKAA
ENPMEEASFS FLKEKIKDVL DTLTDREREV IEQRFGLRDG SPRTLEEVGR QFSVTRERIR
QIEAKALRKL RHPTRISKIK GFLEMTES
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