| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_1604 |
|---|
| Symbol | |
|---|
| ID | 6274632 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | - |
|---|
| Start bp | 1928195 |
|---|
| End bp | 1929577 |
|---|
| Gene Length | 1383 bp |
|---|
| Protein Length | 460 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 642613664 |
|---|
| Product | NADH dehydrogenase (quinone) |
|---|
| Protein accession | YP_001878205 |
|---|
| Protein GI | 187736093 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1007] NADH:ubiquinone oxidoreductase subunit 2 (chain N) |
|---|
| TIGRFAM ID | [TIGR01770] proton-translocating NADH-quinone oxidoreductase, chain N |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.788637 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 53 |
|---|
| Fosmid unclonability p-value | 0.614685 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGCGT ATATTCCGGA ATTCATCCTG GCCGGCCTGG CAATGCTTTT GCTTCTGGCG
GAGACCTTCT GCAAAAAAAC GCCCAAATTT ATTTTCGGGC TGATTGGCGC GGCGGGAACC
CTGGCGATGC TTCCCTTCTA CATGGAAGGG CTCTATGACA ACATCTACAT CATCCTGGCG
CTCGTCGCCA CAGCAGTCAC CCTGTTGCTT TCCGTAGATT TCCGGGCCGT CATCAACCTT
TCCTCCAATG ATTCCAAATC CCAGGACGGA ACGGGGGAAT TCTACATCCT GCCCCTGCTG
GCCTGCGTAG GCATCACCTC CCTGTGCAAG GCATCCAACC TAGTGGAACT GTTCGTCTCC
CTGGAAGTGC TCACCCTGAG TTCCTTCATC ATGGTAGGCT ACTTCCGGCG GAACCTGGGT
TCCACGGAAG CGGGCATCAA GTACCTGATT CTGGGCGCCG TCAGCACGGG GTTTCTCGTT
TTCGGCCTGG CCTGGTATTT CGGCATTACG GGAACATTCA TTTATAATGA AACGATCGTC
AGCCACGCCC TGGCCGGCCA GACAGCCCCC GCCATGTACC TGGCCCTCGC CATGCTGCTG
CTCGGTACAG CATTCAAAAT CGGTGCAGTT CCCATGCAGC TGTGGATTCC GGATGTGTAC
CAGGGCGCTC CCACTCCGGT GACAGCTTTC CTTTCCGTAG CCTCCAAGGT AGCCGGATTC
GCCCTGTTCG GCATCATCCT GGCCCCATTC GCCGTGCTGC CTCCCGTCGA ATTCGTCGTA
GCCCTGATGG CCGCCGCCAC CCTGCTGGTG GGCAACCTGG GCGCCATTCC CCAGACGAAC
CTGAAACGCA TGATGGGGTA TTCTTCCATT GCACAGGCAG GCTTCATTCT TCCCCTGTTT
ATCGGTACTG TGGACGGCAA GCTGGCTCCG AACGCCCCGT TCTACCTGGC TGTGTACCTG
GTCATGACCT TCGGCGCCTT TTTCGCCCTT GCCATGATCC GCATCCAGCG CGGGAGCGAG
GAAATTTCCG CGTTCCGCGG TCTGGGCAAA ACCAATCCCC GGCTGGCGCT GGCGGTCACC
ATCATGTTCG CCTCCCTGGC GGGCGTGCCG CTGACGGCCG GATTTTTCGC CAAAATGATT
TCTTTCGTGC ACGTCATCAA TACGGGTCTG TATCTGGGTT GGATGCTCCC CGTCATGATC
GTCTGCGCTG CATCCGGGTT TTACTATTAC TTCAAGGTCA TCCGCTCCAT GTACTGGGAC
AAGCCCGCAG AAAACGCAGA ACCCGTGCAG GTACCGGCCA TTTCCGGAGT CATGCTGGCC
GCGTTTTCCA TCTTCATCGT GCTGGGGGGC CTGATGCCCC TGTTCCTGAA CCCCATCCGG
TAA
|
|---|
| Protein sequence | MQAYIPEFIL AGLAMLLLLA ETFCKKTPKF IFGLIGAAGT LAMLPFYMEG LYDNIYIILA
LVATAVTLLL SVDFRAVINL SSNDSKSQDG TGEFYILPLL ACVGITSLCK ASNLVELFVS
LEVLTLSSFI MVGYFRRNLG STEAGIKYLI LGAVSTGFLV FGLAWYFGIT GTFIYNETIV
SHALAGQTAP AMYLALAMLL LGTAFKIGAV PMQLWIPDVY QGAPTPVTAF LSVASKVAGF
ALFGIILAPF AVLPPVEFVV ALMAAATLLV GNLGAIPQTN LKRMMGYSSI AQAGFILPLF
IGTVDGKLAP NAPFYLAVYL VMTFGAFFAL AMIRIQRGSE EISAFRGLGK TNPRLALAVT
IMFASLAGVP LTAGFFAKMI SFVHVINTGL YLGWMLPVMI VCAASGFYYY FKVIRSMYWD
KPAENAEPVQ VPAISGVMLA AFSIFIVLGG LMPLFLNPIR
|
|---|
| |