| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_1197 |
|---|
| Symbol | |
|---|
| ID | 6273840 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | + |
|---|
| Start bp | 1433207 |
|---|
| End bp | 1435192 |
|---|
| Gene Length | 1986 bp |
|---|
| Protein Length | 661 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 642613248 |
|---|
| Product | helicase c2 |
|---|
| Protein accession | YP_001877803 |
|---|
| Protein GI | 187735691 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG1199] Rad3-related DNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.0000973223 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 72 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGGCCG CCGGGGAAGA GGGCATGGAA GGCGTCAGCG CTTTTGAGGC TTATGTCCAC
CGGGCATTTG CCCCGGACGG ATTGTTTTCC CGTGCCAGGG ATTTTGAGTA CCGGGCGGAG
CAGCAGAGCA TGGCCCTGGC TGTGGCGAGG GCGCTCCAAG TGGATGCGCC GCTGCTGGTG
GAGGCCGGCA CAGGCGTGGG CAAGTCCCTG GGGTATTTGC TGCCGGCGGT GAAGTTTGCT
TTGGATTTTG ACCGGAAGGC GGTGATTTCC ACGCATACCA TCAATTTGCA GGAGCAGTTG
TTCAACAAGG ATATTCCGCT GCTGCGCACC GCCCTGGGGA TTGATTTTTC CGCCGCCCTG
CTGAAGGGCA GGCAGAATTA CCTGTGCCAT ACCCGCCTGC GGCGCGCGCT GGCGCAGATG
GATTCCCTCT TTACGCAGGG TGAGGCCGCG GAGTTGAAGA GGATCCAGGA CTGGGCCCTG
AGAACGCAGG ACGGCACCCT GAGCGATATG GCATTCCGGC CGTCTTCCAA GGTATGGGCC
ATGGTCTGCA GCGAACCGCA TGCGTGCAGC ATGCGCCATT GCGGCCCTTC CTGTCCGTAC
CAGGCAGCCC GCAAGCGGGT TCTGGAGGCC AAAGTAGTGG TGCTTAACCA TACCCTGTTT
TTCGGGCTGA TGGCCCAGGC GGAGGATTCC GAGGAGGCGG GGTTCGTGTT TCCCGGGGAT
TTTGTGATTC TGGACGAGGC TCACATGATT GAGAACATCG CCGCCCGCCA GCTAGGCGTC
CAGCTCTCGG AACCGCATTT GAATTATGAA TTGCTGCGGA TGTACAATCC GCGCACGCAC
AAGGGGTTGC TGAAACCGCT GAACAATCCG TCCCTGTTTC AGCGGGTTCA GGACGTGATG
GACGCCTCCG GCCTGTTTTT CCAGAATGCG CGGGATGACC TGGGGTTTGC TGGTTCCGGA
AAGATTGTCC GCATTCTTCA GCCGGAGTGG TCGCAGGATA TTCTTTCTCA GCCTTTGATG
GAACTGATCG GGGAATTGAA AACGGAGAGG GAGAAACAGG AGGAAAATGC AGCCGTGAAG
GATGAACTGG CGGATATGGC CGCCCGGATG GAGGAGGCGC AGGCTTCCCT GAAGGTGCTG
ATGGACATGA CGGAGGAAGG TCACGTATAT TGGGCGGAGC GTTCCGGTCC GGATGGAAGG
AACATGAGCG TTTGCTCCGC TCCCGTGGAG GTGGGAGATA TTTTGAGGGA ACGCCTGTTT
TCCGCCGGAC GTTCCGCCAT TCTGACTTCC GCCACGCTGG GGACCGGAGA TGCGGACATG
AGTTATTTTG CGGGGCGCGT AGGGGCGGAA CGCATTCGGA AGCTTCAGAT CGGAAGCCCG
TTCAATTACC GGGAGCAGAT GCGGCTGATT GTAGCCCGCT CCATGCCGGA GCCGGACCAG
CCGGAGTATG CGGAAGTTTT GCCGGAATGG ATTAAAAGGT ATCTGGCGGA GTCCCGCGGC
AGGGCTTTCG TGCTGTTTAC CAGCTATCGT CTGATGGTTC AGGCGGCGGA GAAAGTGCGT
CCTTTTTGCG AGGAACAGGG ATGGACGCTG TATGTGCAGG GGCAGGATAT GCAGCGGCAT
GCCATGCTGG AGGCGTTCCG GAAGGATGTG GACAGCGTGC TTTTCGGAAC GGACAGTTTC
TGGACCGGGG TGGATGTGCC GGGAGAATCT CTTTCCAACG TTATTGTCAC GCGCTTGCCG
TTTGAAGTGC CGGATCATCC GCTTGTGGAG TCCCGTTTTG AGAGTATCAG GGAACGCGGG
GGGAATCCGT TTTACGAATA TTCCGTACCT GTAGCCATTC TGAAGCTGCG GCAGGGGGTA
GGGCGGCTGA TCCGCACCAG GAGCGATTCC GGCATGGTGG TGATTCTTGA TCCGCGCGTA
GCTACCAAGA GGTATGGAAT GCGTTTTCTC AAGTCCCTGC CGGAGGCCCG GCTGGAGTTT
GTATGA
|
|---|
| Protein sequence | MKAAGEEGME GVSAFEAYVH RAFAPDGLFS RARDFEYRAE QQSMALAVAR ALQVDAPLLV
EAGTGVGKSL GYLLPAVKFA LDFDRKAVIS THTINLQEQL FNKDIPLLRT ALGIDFSAAL
LKGRQNYLCH TRLRRALAQM DSLFTQGEAA ELKRIQDWAL RTQDGTLSDM AFRPSSKVWA
MVCSEPHACS MRHCGPSCPY QAARKRVLEA KVVVLNHTLF FGLMAQAEDS EEAGFVFPGD
FVILDEAHMI ENIAARQLGV QLSEPHLNYE LLRMYNPRTH KGLLKPLNNP SLFQRVQDVM
DASGLFFQNA RDDLGFAGSG KIVRILQPEW SQDILSQPLM ELIGELKTER EKQEENAAVK
DELADMAARM EEAQASLKVL MDMTEEGHVY WAERSGPDGR NMSVCSAPVE VGDILRERLF
SAGRSAILTS ATLGTGDADM SYFAGRVGAE RIRKLQIGSP FNYREQMRLI VARSMPEPDQ
PEYAEVLPEW IKRYLAESRG RAFVLFTSYR LMVQAAEKVR PFCEEQGWTL YVQGQDMQRH
AMLEAFRKDV DSVLFGTDSF WTGVDVPGES LSNVIVTRLP FEVPDHPLVE SRFESIRERG
GNPFYEYSVP VAILKLRQGV GRLIRTRSDS GMVVILDPRV ATKRYGMRFL KSLPEARLEF
V
|
|---|
| |