| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_1001 |
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| Symbol | |
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| ID | 6274121 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Akkermansia muciniphila ATCC BAA-835 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010655 |
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| Strand | - |
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| Start bp | 1192801 |
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| End bp | 1193706 |
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| Gene Length | 906 bp |
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| Protein Length | 301 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 642613051 |
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| Product | short chain dehydrogenase |
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| Protein accession | YP_001877609 |
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| Protein GI | 187735497 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 55 |
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| Fosmid unclonability p-value | 0.903414 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGAACAAC GTCTATCCAA AAAAGTCATG ATATTGACGG GAGCCGGGCA AATCGGCATG
GCCATTGCCC GCAGAATAGG AAGCGGCATG AAAATCGTCA TTGGCGACAA AAATATCGGG
AACGCGCATG CCATTGCCCG GACGATGAAT CAGGCCGGAT TTGACACCAT CCCCTTAGAG
ATGGATCTCT CTTCCCGGTA CTCCATCCTG CATTTGATTG CAGAAGCACA GAGGTACGGC
AATATTTCCA TGCTCGTCAA TGCAGCGGGG GTTTCCCCCA GCCAGGCATC CGTTGAAACC
ATTCTTAAAG TGGATCTCTA CGGAACCGCC GTATTGCTGG AAGAGGTGGG GAAAGTTATT
TGCCCCGGCG GCTCGGGAGT AACTATCTCC AGCCAATCCG ATCACCGCAT GCCCGCTCTG
ACTGCCGAAC AGGACGAACA ACTGGCCATG ACTCCAACAG AGGAATTGCT GAACCTCGAA
CTCCTCCAAC CCGGAAATAT CAAGGACACT CTGCATGCCT ACCAGATGGC GAAACGCTGC
AACGTCAAGC GTGTCATGGC GGAAGCCGTC AAATGGGGTG CCAAAGGCGC ACGCATCAAC
TCCATTTCCC CGGGCATTAT AGTCACCCCT CTGGCAATCG ATGAATTCAA CGGTCCCAGA
GGTGATTTTT ACAGAAACAT GTTTGCGAAG TGCCCTGCAG GAAGACCCGG TACGGCGGAT
GAAATAGCCC ATGTAGCGGA ATTGCTGATG GGCGGCAAGG GGGCTTTCAT CACCGGCGCG
GACTTCCTGA TTGACGGGGG AGCCACCGCC TCCTATTTCT ACGGTCCGTT GAAACCGCAG
ATTCAAAAGA GAAAACCTCT CAGACAATCG AAAACGGCAG GCAAAGCACA AAATGAAGCT
TACTGA
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| Protein sequence | MEQRLSKKVM ILTGAGQIGM AIARRIGSGM KIVIGDKNIG NAHAIARTMN QAGFDTIPLE
MDLSSRYSIL HLIAEAQRYG NISMLVNAAG VSPSQASVET ILKVDLYGTA VLLEEVGKVI
CPGGSGVTIS SQSDHRMPAL TAEQDEQLAM TPTEELLNLE LLQPGNIKDT LHAYQMAKRC
NVKRVMAEAV KWGAKGARIN SISPGIIVTP LAIDEFNGPR GDFYRNMFAK CPAGRPGTAD
EIAHVAELLM GGKGAFITGA DFLIDGGATA SYFYGPLKPQ IQKRKPLRQS KTAGKAQNEA
Y
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