| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_0887 |
|---|
| Symbol | |
|---|
| ID | 6274280 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | - |
|---|
| Start bp | 1056183 |
|---|
| End bp | 1057121 |
|---|
| Gene Length | 939 bp |
|---|
| Protein Length | 312 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 642612942 |
|---|
| Product | dehydrogenase E1 component |
|---|
| Protein accession | YP_001877501 |
|---|
| Protein GI | 187735389 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1071] Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.010847 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 76 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTGCTGG CGCGGGCTTT TGACACCAAA ATTTCCAGCC TTTACAAAGC GGGCAAAATT
ACGGGGGGCG TTTACCTGGG CCGCGGACAT GAAGCGATTG CCGCATGCGG AGGCGTCTTT
CTGACTGCCG GCTACGATGT AATCGCCCCG TTCATCCGGG AACAGGCGGC ACGCGTCACC
TGGGGGGAAC CGATTATTGA AGCGGCACGC GCCTACCTGG GTTCCGCCCT GGGATATATG
AAAGGGCGGG ACGGCAATGT CCACCGGGGC CTGCCAGCGG AAGGCTATAT GGCTCCCATC
AGCCATCTGG GCAGCACGGT GGCTTTCGTC ATCGGCTGCC TTTTCGCCAA GCGCCTGGAC
GGCAAACTGC CCGGCCCCGT GGGAGTAGCT TTCTGCGGCG ACGGCACCAC GTCCACGGGT
GCTTTTCACG AAGCCGCCAA TATGGCGAAC GTGGAGCGGC TGCCTCTGGT GCTCGTGGTA
ACCAATAATC AATTTGCCTA CTCCACCCCC AATATCAGGG AATTCGGAGA AGCCTCCCTG
GCGGACAGGG GCCGCGGCTA CGGCTTCACC GTGCATGAAA CGGACGGCAC GGACTTCATG
GCCACGCTGG AAACCTTCCG GACCGCCGTC AATAACGCGA GGGAAGGCCG GGGCCCCCAG
TGGGTGCTTG CCAAGACCCT CCGCATGTGC GGGCACGGGG AACATGACGA CGCCTCCTAC
ATCCCCAGGG AGCTGAAAGA GGAATATGAA AAAAAAGACC CCGTGGCAGT CGCGGAACGG
CAGCTGCTGG CAGCCGGCTG GCTCACGCCG GAAGAAACGG CGGCTTTGAA AAAACAGTAT
GCCGATGAAG TCCAGCTGGC CGTAGCCACC GCGCAGCGGG AACCGGAACC GGACCCCTTC
CGGGAAGACT GGAACGCCAC GGTATGGAGA CCTTATTAA
|
|---|
| Protein sequence | MLLARAFDTK ISSLYKAGKI TGGVYLGRGH EAIAACGGVF LTAGYDVIAP FIREQAARVT
WGEPIIEAAR AYLGSALGYM KGRDGNVHRG LPAEGYMAPI SHLGSTVAFV IGCLFAKRLD
GKLPGPVGVA FCGDGTTSTG AFHEAANMAN VERLPLVLVV TNNQFAYSTP NIREFGEASL
ADRGRGYGFT VHETDGTDFM ATLETFRTAV NNAREGRGPQ WVLAKTLRMC GHGEHDDASY
IPRELKEEYE KKDPVAVAER QLLAAGWLTP EETAALKKQY ADEVQLAVAT AQREPEPDPF
REDWNATVWR PY
|
|---|
| |