| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_0867 |
|---|
| Symbol | |
|---|
| ID | 6274301 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | - |
|---|
| Start bp | 1035676 |
|---|
| End bp | 1036824 |
|---|
| Gene Length | 1149 bp |
|---|
| Protein Length | 382 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 642612922 |
|---|
| Product | peptidase M42 family protein |
|---|
| Protein accession | YP_001877481 |
|---|
| Protein GI | 187735369 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1363] Cellulase M and related proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.937418 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 69 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATTTGG AACTGCTTCG TCAGGTTTGC GTGACTCCGG GCGCTCCGGG GTTTGAAGAC
AAAATCCGCG ATTTCATCAT CCAGGAAGTG GCCCCGCTGG TGGACGCCGT GCGCGTGGAC
AACATGGGCA GCGTGATTGC CATCGTGGAA GGCAAAAACA CGGAAAAAAC CATGATGGCC
GCCGCCCACA TGGATGAAAT CGGGTTCATG GTCCGTCACA TCGACGACAA GGGGTTCATC
AAATTCCTGC CACTGGGCGG CTTTGACGCC AAGACGCTGA CGGCCCAGCG CGTCATCGTC
CACGGTAAAA AAGACCTCAT CGGCGTCATG GGCGTGAAAC CCATCCACGT CATGTCCCCG
GCGGAACGTA CCAAGCTGCC GGAAGTGACC GACTTCTTCA TTGACCTGGG CATGAGCAAG
GAGGAAGTGG AAAAATACGT TTCCGTAGGC GACTCCGTTA CCCGTGAACG GGATTTGGTG
GAAATGGGGG ATTGCGTGAA CGTCAAATCT CTGGACAACC GCGCCGGATG CTACGTGCTG
ATTGAAGCCC TCCGCGCCAT CAAGGCTTCC AGGAAGAAAC CCTCCTGCAA CTTCGTGGCC
GCCTTTACCG TTCAGGAGGA AGTGGGCCTG AGGGGCGCGC AGGCCGGCAC GCTGGACATC
CAACCGGATT TCTCCATTGC CCTGGATGTC ACCATCGCCT GTGACATTCC CGGAACTCCG
GCGCACGACC AGGTTTCCCA CCTGGGCGCA GGCGCCGCCA TCAAGCTGTA TGACGGTTCC
GTCATTGCAG ACCGCCGCAT GGTCAAGTTC ATGAAGGCCA TGGCAGACGC CAACAAAATT
AAATGGCAGA CGGAAATGCT GCCGGCGGGA GGCACGGATG CCGGAGCCAT GCAGAAATTC
GTTCCGGGCG GTTCCATTGC CGGGGCCATT TCCGTTCCCA CCCGCAATGT GCACCAGGTT
ATTGAAATGG CTCACAAAGA CGACCTGGAC GCTTCCGTAG CGCTTCTGAC CGCCTGCGCC
ATGAACGTGG ACAAATGGGA CTGGTCCTGG AACTCCGTCA ACGAATGCCC GGCGGAAAAA
CCCGCCAAGG CCGCAAAAAC GGCAGCCAAG CCCGCCAAAG CCGCTGCCAA GAAGAAAAAG
GCCAAATAA
|
|---|
| Protein sequence | MNLELLRQVC VTPGAPGFED KIRDFIIQEV APLVDAVRVD NMGSVIAIVE GKNTEKTMMA
AAHMDEIGFM VRHIDDKGFI KFLPLGGFDA KTLTAQRVIV HGKKDLIGVM GVKPIHVMSP
AERTKLPEVT DFFIDLGMSK EEVEKYVSVG DSVTRERDLV EMGDCVNVKS LDNRAGCYVL
IEALRAIKAS RKKPSCNFVA AFTVQEEVGL RGAQAGTLDI QPDFSIALDV TIACDIPGTP
AHDQVSHLGA GAAIKLYDGS VIADRRMVKF MKAMADANKI KWQTEMLPAG GTDAGAMQKF
VPGGSIAGAI SVPTRNVHQV IEMAHKDDLD ASVALLTACA MNVDKWDWSW NSVNECPAEK
PAKAAKTAAK PAKAAAKKKK AK
|
|---|
| |