Gene Amir_6597 details

Gene Information

• Locus tag: Amir_6597
• Symbol: rpsE
• ID: 8330809
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Actinosynnema mirum DSM 43827
• Kingdom: Bacteria
• Replicon accession: NC_013093
• Strand: -
• Start bp: 7738640
• End bp: 7739245
• Gene Length: 606 bp
• Protein Length: 201 aa
• Translation table: 11
• GC content: 73%
• IMG OID: 644947023
• Product: 30S ribosomal protein S5
• Protein accession: YP_003104241
• Protein GI: 256380581
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0098] Ribosomal protein S5
• TIGRFAM ID: [TIGR01021] ribosomal protein S5, bacterial/organelle type

Plasmid Coverage information

• Num covering plasmid clones: 24
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCAGGAC GCACGCGTCG CGAAGGCGGC GGGGGCGAGC GCGGAGAGCG CCGCGACCGT 
CGTGACGGCG GCCGCGGCGG CGCGGCCCAG GAGAAGACCC CGCACCTGGA GCGCGTTGTC 
GCGATCAACC GCGTCTCCAA GGTGGTCAAG GGTGGTCGCC GGTTCAGCTT CACGGCCCTC 
GTGGTCGTGG GCGACGGCGA CGGCATGGTG GGCGTCGGCT ACGGCAAGGC CAAGGAAGTT 
CCGGCCGCCA TCGCCAAGGG CGTCGAGGAG GCGAAGAAGA ACTTCTTCCG CGTCCCCCGC 
ATCGCGGGCA CCATCCCCCA CCCGGTCCAG GGTGAGAAGG CGGCCGGTGT CGTGCTGCTG 
CGCCCGGCCT CGGCCGGTAC CGGTGTCATC GCCGGTGGCG CCGTCCGCGC GGTGCTGGAG 
TGCGCCGGTG TCCACGACGT GCTGAGCAAG TCGCTGGGCT CCGACAACGC CATCAACATC 
GTGCACGCCA CCGTGGCGGC CCTGAAGGGC CTCCAGCGTC CGGAGGAGGT GGCCGCCCGC 
CGCGGTCTGC CGCTCGAGGA CGTCGCTCCC GCCGGTATGC TGCGCGCCCG CGCAGGGGCG 
GTGTGA 

 

Protein sequence

MPGRTRREGG GGERGERRDR RDGGRGGAAQ EKTPHLERVV AINRVSKVVK GGRRFSFTAL 
VVVGDGDGMV GVGYGKAKEV PAAIAKGVEE AKKNFFRVPR IAGTIPHPVQ GEKAAGVVLL 
RPASAGTGVI AGGAVRAVLE CAGVHDVLSK SLGSDNAINI VHATVAALKG LQRPEEVAAR 
RGLPLEDVAP AGMLRARAGA V