Gene Amir_6583 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmir_6583 
Symbol 
ID8330795 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameActinosynnema mirum DSM 43827 
KingdomBacteria 
Replicon accessionNC_013093 
Strand- 
Start bp7729881 
End bp7730933 
Gene Length1053 bp 
Protein Length350 aa 
Translation table11 
GC content68% 
IMG OID644947009 
ProductDNA-directed RNA polymerase subunit alpha 
Protein accessionYP_003104227 
Protein GI256380567 
COG category[K] Transcription 
COG ID[COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit 
TIGRFAM ID[TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.0999489 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGCTGATTT CCCAGCGCCC CTCGCTCAGC GAGGAAGCGG TCAGCGAGAC CCGCTCCCGG 
TTCGTCATCG AGCCGCTGGA GCCGGGTTTC GGCTACACCC TCGGCAACTC CATCCGCCGC 
ACCCTGCTGT CCTCCATCCC CGGCGCGGCC GTGACCAGCA TCCGCATCGA CGGCGTGCTG 
CACGAGTTCA CCACCGTGCC CGGTGTGAAG GAGGACGTCA CCGACATCAT CCTCAACCTC 
AAGGAGCTGG TCGTCAGCTC CGAGGAGGAC GAGCCGGTGA CCATGTACCT GCGCAAGCAG 
GGGCCCGGTG CGGTGACCGC CGGTGACATC GTGCCCCCGG CCGGTGTGAC CGTGCACAAC 
CCCGACCTGC ACATCGCCAC CCTGAACGGC AAGGGCAAGC TGGAGATCGA GCTCGTCGTC 
GAGCGCGGTC GCGGCTACGT CCCCGCCGTC CAGAACAAGC AGGCCGGTGC CGAGATCGGC 
CGCATCCCCG TCGACTCGAT CTACTCGCCC GTCATGAAGG TGACCTACAA GGTCGAGGCC 
ACCCGTGTCG AGCAGCGGAC CGACTTCGAC AAGCTGATCC TCGACGTCGA GAGCAAGCCC 
TCCATCACGC CGCGCGACGC CGTGGCGTCG GCGGGCAAGA CCCTGGTGGA GCTGTTCGGC 
CTCGCTCGCG AGCTGAACGT CGACGCCGAG GGCATCGAGA TCGGACCCTC GCCCGCCGAG 
GCGGACACCA TCGCGGCGTT CGCGATGCCG ATCGAGGACC TGGACCTCAC CGTCCGGTCC 
TACAACTGCC TCAAGCGCGA GGGCATCCAC ACGGTGGGCG AGCTCGTCTC GCGCAGCGAG 
GCGGACCTGC TGGACATCCG CAACTTCGGC GCGAAGTCCA TCGACGAGGT CAAGATGAAG 
CTCGTCGGTC TGGGCCTCGC GCTGAAGGAC AGCCCTCCCG GGTTCGACCC CTCGGCCGCC 
GCGTCCGACT ACCCCGCTGA GGGGTGGGGC GCGGACTCGT CCGTGGACTC CCACGACGAC 
GGCCAGGACT ACGCGGAGAC CGAGCAGCTC TGA
 
Protein sequence
MLISQRPSLS EEAVSETRSR FVIEPLEPGF GYTLGNSIRR TLLSSIPGAA VTSIRIDGVL 
HEFTTVPGVK EDVTDIILNL KELVVSSEED EPVTMYLRKQ GPGAVTAGDI VPPAGVTVHN 
PDLHIATLNG KGKLEIELVV ERGRGYVPAV QNKQAGAEIG RIPVDSIYSP VMKVTYKVEA 
TRVEQRTDFD KLILDVESKP SITPRDAVAS AGKTLVELFG LARELNVDAE GIEIGPSPAE 
ADTIAAFAMP IEDLDLTVRS YNCLKREGIH TVGELVSRSE ADLLDIRNFG AKSIDEVKMK 
LVGLGLALKD SPPGFDPSAA ASDYPAEGWG ADSSVDSHDD GQDYAETEQL