| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_6346 |
|---|
| Symbol | |
|---|
| ID | 8330557 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | - |
|---|
| Start bp | 7440994 |
|---|
| End bp | 7441884 |
|---|
| Gene Length | 891 bp |
|---|
| Protein Length | 296 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 78% |
|---|
| IMG OID | 644946775 |
|---|
| Product | dTDP-4-dehydrorhamnose reductase |
|---|
| Protein accession | YP_003103994 |
|---|
| Protein GI | 256380334 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1091] dTDP-4-dehydrorhamnose reductase |
|---|
| TIGRFAM ID | [TIGR01214] dTDP-4-dehydrorhamnose reductase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.191715 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGCCA CCGCGCTGCT CGTGCCCGGC GGGCGCGGCC AGCTCGGGCA GGACCTGCTC
GCCACCGGCG GGCGCGTGCG GGCGCTCTCG TCGGCCGAGC TGGACATCAC CGACGCCGAC
GCCGTCGCGG ACCGGGTGTC CGAGTTCGCC GCGTGGGCAC GCGCCGAGGG CCTCGCCCCG
GTCGTGGTCA ACGCCGCCGC CTACACCGCC GTGGACGACG CCGAGACCGA CGAGGACCGC
GCCCTCGCGG TCAACGCGCT CGGGCCGGAA CTGCTCGCGC TCGCCTGCCG CGAGCACGAC
GTGCCGCTGC TGCACGTGTC CACCGACTAC GTCTTCCCCG GCGACGCCAC CGCGCCCTAC
GAGCCGGACG ACGTCACCGG GCCGCGCTCG GCCTACGGGC GCACCAAGCT CGCGGGCGAG
CGGCGCGCGC TGGCCGCCTG GGACCGGACC TGGGTCGTGC GCACCGCGTG GGTGTACGGG
GCGGGCGGGC CGAACTTCGT GAAGACGATG GCGAGGCTGG CCGGGCAGCG CGAGAGCCTG
TCCGTCGTGG ACGACCAGCG CGGCTCGCCC ACCTGGTCCG CCGACCTCGC GGCCGGGCTG
GTCGAGCTGG CCGCCGCGAC CACCGGTCCC GCCGCGCCCG CGCAGCGCGT GCTGCACGCC
ACCGGCGGCG GCGAGACGAC CTGGTTCGGC CTCGCGCGGG CGGTGTTCGA GGAGCTGGGG
CTGGACCCGG AGCGGGTGCG CCCCTGCGGC ACCGAGGACT TCCCCCGCCC CGCGCCGAGG
CCCGCGTACT CGGTGCTCTC GCCGAAGGCG TGGGAGTCGG CGGGGCTCAC GCCGCTGCGA
CCGTGGCGCG AAGCGCTGAC CGCGGCCGTG CGGGACGGGG TCGCGGGCTA G
|
|---|
| Protein sequence | MAATALLVPG GRGQLGQDLL ATGGRVRALS SAELDITDAD AVADRVSEFA AWARAEGLAP
VVVNAAAYTA VDDAETDEDR ALAVNALGPE LLALACREHD VPLLHVSTDY VFPGDATAPY
EPDDVTGPRS AYGRTKLAGE RRALAAWDRT WVVRTAWVYG AGGPNFVKTM ARLAGQRESL
SVVDDQRGSP TWSADLAAGL VELAAATTGP AAPAQRVLHA TGGGETTWFG LARAVFEELG
LDPERVRPCG TEDFPRPAPR PAYSVLSPKA WESAGLTPLR PWREALTAAV RDGVAG
|
|---|
| |