| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_5924 |
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| Symbol | |
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| ID | 8330131 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Actinosynnema mirum DSM 43827 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013093 |
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| Strand | - |
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| Start bp | 6967332 |
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| End bp | 6967850 |
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| Gene Length | 519 bp |
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| Protein Length | 172 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 644946355 |
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| Product | 16S rRNA processing protein RimM |
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| Protein accession | YP_003103578 |
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| Protein GI | 256379918 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0806] RimM protein, required for 16S rRNA processing |
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| TIGRFAM ID | [TIGR02273] 16S rRNA processing protein RimM |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.144619 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACGTCG TCGTCGGCCG CGTGGCCAAG GCGCACGGCA TCCGCGGCGA GCTCGCCGTG
GACGTGCGCA CCGACTCGCC GGAAGCGCGC TTCGCACTGG GCTCCGTCCT GGCCGCGAAG
CTGCGCGACG GCACGTCCCG CGACCTCACC GTCGCAGCCG CCCGGTACCA CTCCGGGCGG
CTGCTGGTGC GGTTCGAGGA AGTCCTCACG AGGGACGTCG CGGAACTCCT GCGGGGCACC
CTGCTGCTGG GCAGCACGGA CGCCCTGCCC CCCACCGACG ACCCGGACGA GTTCTACGAC
CACCAGCTGG AGGGCCTCGC GGCCGAGCTG GCGGACGGGA CCCGGATCGG GACCGTCAAG
GAGATCGTGC ACGGCCCCGG CGGTGAGCTG CTCGTCCTCG TCCGCGAGGA CGGCTCCGAG
GCGCTGGTGC CGTTCGTCAG GCAGATCGTG CCCACCGTGG ACGTGGCCGG TGGCCGCGTC
GTCGTCGACC CGCCAGAGGG CCTGCTCGAT GCGGATTGA
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| Protein sequence | MDVVVGRVAK AHGIRGELAV DVRTDSPEAR FALGSVLAAK LRDGTSRDLT VAAARYHSGR
LLVRFEEVLT RDVAELLRGT LLLGSTDALP PTDDPDEFYD HQLEGLAAEL ADGTRIGTVK
EIVHGPGGEL LVLVREDGSE ALVPFVRQIV PTVDVAGGRV VVDPPEGLLD AD
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