| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_5828 |
|---|
| Symbol | |
|---|
| ID | 8330035 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | - |
|---|
| Start bp | 6865056 |
|---|
| End bp | 6865955 |
|---|
| Gene Length | 900 bp |
|---|
| Protein Length | 299 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 644946262 |
|---|
| Product | tRNA pseudouridine synthase B |
|---|
| Protein accession | YP_003103485 |
|---|
| Protein GI | 256379825 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0130] Pseudouridine synthase |
|---|
| TIGRFAM ID | [TIGR00431] tRNA pseudouridine 55 synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.786623 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCCCGCAT CTCCCCGCCC CGCTGTTCCG CCCGGTCTCG TCGTCGTGGA CAAGCCCGAC
GGCATGACCT CCCACGACGT GGTCGCCAAG GTGCGCCGCA TCCTCGGCAC CCGCAAGGTC
GGCCACGCGG GCACGCTCGA CCCGATGGCC ACCGGCGTGC TCGTCCTCGG CGTCGAGCGC
GCCACCAAGC TGCTCGGCCA CCTCGCGCTC GACAGCAAGG CCTACCTGTC CACGATCCGC
CTCGGCGCCT CCACCACCAC CGACGACGCC GAGGGCGAGG TGCTGTCCTC GGCGGACTCC
ACCGCCGTGC CCGAGGACGC GATCCGCGCG GGCGTCGCCA AGCTCACCGG CGCCATCCAG
CAGGTGCCGA GCGCGGTCAG CGCCGTGAAG GTCGACGGCA AGCGCGCCTA CGCCCGCGTC
CGCGCGGGCG AGGAGGTCGA GCTGCCGCCG CGACCGGTCA CCGTGCACCG GTTCGACGTG
CTGTCGATCC GCCGCGAGGC CGACGCGACC GAGCTGGACG TGATGGTCGA GTGCTCCTCC
GGCACGTACG TGCGCGCGCT GGCCCGCGAC CTCGGCGTCG ACCTGGGCGT CGGCGGCCAC
CTGGCGGCGC TGCGCCGCAC CAGGGTCGGC CCGTTCGACC TGCGGGTGGC CAAGACCCTG
GAGCAGCTCG CCGACGAGCC CGGCCTCTCC CTGGACCTGG ACGCCGCGGT GTCGGCGGCG
TTCCCGCGCC GCGAGATCAC GCCCAGCGAG GTCGTCGCCC TGTCCCACGG CCAGCGCCTG
CGCGCGGGCG GGGTGGAGGG CACCTACGGC GTGTTCGGCC CCGACGGCCA CGCGGTGGCC
CTGGCGAAGG ACGAGGGCCC GCTGGCGAAG CCGGTCGTCG TCCTGACCCC CGCGGGCTGA
|
|---|
| Protein sequence | MPASPRPAVP PGLVVVDKPD GMTSHDVVAK VRRILGTRKV GHAGTLDPMA TGVLVLGVER
ATKLLGHLAL DSKAYLSTIR LGASTTTDDA EGEVLSSADS TAVPEDAIRA GVAKLTGAIQ
QVPSAVSAVK VDGKRAYARV RAGEEVELPP RPVTVHRFDV LSIRREADAT ELDVMVECSS
GTYVRALARD LGVDLGVGGH LAALRRTRVG PFDLRVAKTL EQLADEPGLS LDLDAAVSAA
FPRREITPSE VVALSHGQRL RAGGVEGTYG VFGPDGHAVA LAKDEGPLAK PVVVLTPAG
|
|---|
| |