| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_5313 |
|---|
| Symbol | |
|---|
| ID | 8329515 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | + |
|---|
| Start bp | 6314998 |
|---|
| End bp | 6318039 |
|---|
| Gene Length | 3042 bp |
|---|
| Protein Length | 1013 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 79% |
|---|
| IMG OID | 644945752 |
|---|
| Product | Lanthionine synthetase C family protein |
|---|
| Protein accession | YP_003102980 |
|---|
| Protein GI | 256379320 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG4403] Lantibiotic modifying enzyme |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0569792 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTGGGGGA CCACGGCCGT GTGCGACGTT GACCCCGTGC CACCCTCAGT CACCCGCCGC
GCCCCCACCA CCGCCTGGTG GGCCGCGGGC GTGCGGACCG TCCACCGGGA GCAGCAGGTC
TCGCACGGCA GACCCGCGTG GGCCGCGTTC ACCGAGCGGG CCTGCGCGCA CGTGCCGCCC
GGCCGCTTCC CCGGTGGCAC CTGGGAGGAG GGGTTCGCGT TCGCGCTGCG CCCCCTGGTG
CGCGCCGCGA CCGCGCGGGA CCGGCGGTTC CGCGACGACT TCGCCCGCGA CCTCGGCCTG
CGCCTGGCCC GCACCGCCGC CCGCACCCTC GTGGTGGAGC TGCACCGGTG GCGGCTCGAC
GGGCGGCTGC GCGGGCTGAC CTCGCGGGAC CGGTTCGCCT CGTTCGTGGA GGACCTCAGG
CCCGCCAGGC TGTTCGCCGA GTACCCGGTG CTCGCCAGGC TGCTCGGCCA GACCTGCCTG
CAGGCCGTCC GCGCCCACCG CGAGGTGCTC GACCACCTGG CCGACGACCG GGTCGCGCTC
GTCGCGGCCC TCATGGGCGG TCGCGACCCC GGACCGCTCG TCGGCGTGTC CACCAGCGGC
GACCGGCACG GCGGCGGGCG CGCGGTGGCG GTGCTGACGT TCGCCGACGG GCGCAAGGTC
GTGCACCGGC CCCGGCCCGT GGAGCAGCAC GCGCTGTTCG CCGACCTGCT CGACTGGTAC
GGCGGGCGCA CCGGCCTGGA CCTGCGCGTC CCGCCCGTGC TGGTGCGGCC CGGCTACGGC
TGGGTCGCCT TCACCGAGGG CGCGCCGTGC GCCGACGTGA CCGACCTCGA CCGGTTCTAC
CACCGGCTCG GCGGGCTGCT CGCGCTGCTG CACGCCGTCG ACGCCACCGA CGCGCACTAC
GAGAACCTGA TCGCGTGCGG GGACCAGCCG GTGCTCGTGG ACGTGGAGAC GCTGTTCCAG
CCGACCACCG GCGTGCCCGC CGACCCGGCC GCGCGGGCGC TGGCCCGGTC GGTGCAGCGC
ACGGCGGTGC TGCCGAGCGT GCTGCTCGGC GAGCACGGGG CGCAGGACGT CGGCGGGGTC
GGCGGGGACG CGGGCGACCA CCCCGGCGAC GGGGTGCGGT GGGTGGACGC GGGGACCGAC
CGGATGCGGC TGGAGCGCGG ACCGGTGCCG GTGGTGGTGG CGGGGAACCG GCCGGTGCTG
GACGGGCGGC CCGCCGAGCC CGCCGAGCAC ACCGGGGCGC TGCTGGCCGG GTTCCGGCTG
GGGTACGACG CGCTGTGCTC GTGGCGGGAG GAGCTGCTGG AGCGGGTGCG GGGGTTCGCG
GGGGCTCCGG TGCGGTACGT GCCGAGGTCC ACGCGGGTGT ACGCGGAGCT GCTGGACGAG
TCGACCCACC CGGACGCGCT GCGCCGGGCG CCCGAGCGCG ACCTGGCGCT GGAGCTGCTG
CGGGAGGAGT CCGGGGACGA CCGGGCGCTG CGGGCGCTCG TGCCGCACGA GGTGGCGGAC
CTGTGGGCGG GCGACGTGCC GCTGTTCACC ACCCGGCCGG AGTCGGTGGA CGTGTGGACG
TCGGTGGGCG AGCGGTTGCC GGGGGTGCTG GACGAGCCGG TGCTGGCGGC GGTGGAGCGG
AAGATCGCCG GGCTGGACGA GGTGGACCGG CACGACCAGG AGTGGGTGAT CGCGGCGGCG
CTGGCCTGCC GACCCGCGGA GGTGGCGCAC CGGACGGGCG GGGCGCTGCG GTCCTCGGTG
GGGAGCGCGG TGCCGGACCC CCGGCGGCTG CTGGTGGCGG CGTGCGGGGT GGCGGACGAG
GTGCTGGCGC GGAGCCTGGT CGAGGGCTGC GGTTCCGGCT CGGGCGGCGT CGGCGGTTTC
GGCGGGGGCC GGGTCAACTG GATCGGGTTG GAGCTGGTCG AGGACCGGCA CTGGGCGGTC
GCGCCGATGG GCGCGGGGCT GTCGAACGGG TACACCGGGG TGGCGCTGTT CCTGGCGCAG
GTCGGGGCGC TGACCGGGGC GTCCCGGTAC ACCGGGCCCG CGCGGGAGGC GCTCGCGCCG
GTGCCGGGGC TGCTCGCCCG GTTCGAGGCG GACCCGGAGC TGGCGCTGGC GGTCGGGGTC
GGCGGGTTCC ACGGGATGGG CGGGATCTGC TACGCCCTGG CGCGCGTCGG CAGGCTGCTC
GGGGACGACC CGGAGATCGC GGGGTGGCTC GCCTCGGCGG TCCGGGTGCT GGGGATCGCG
GCCGGGATCG AGCCGTGGGA GGTCGAGCGC GGGAACCGGG GGCCTGCTCG GGGCGGTCGG
GTCCAGGGCG GTCCGGGGCG GGGGTCCTGG GGGTCGGCGG TCGCCGGCGG CGGGGTCGTC
GGCGGCGGGG TCGCCGGGGT GGTCGAGGGG TGGGCCGGTG GGGTGGCGGC GCTGGTCGCG
GTCGCCGAGG CGGCCGGTGG CGCGGTGGGC GCGGAGGCGT TGCGGGTGGC GCGGGTGCTG
GCCGAGCGGT TGCTGGCGGC CGACGTGCGC GGGGACGGGT TCGCGCGGGG GCGGGCCGGG
GTCGGCTGGG CGCTGCTGCG GTACGCGCGC GCGGCCGGGG ACGAGCGGTG CGCCGTCGCG
GGGCGGGCGC TGCTGCGGGC GGACCGGGCG CTGCGGCAGC GGCTGGTGGA CGTGCGCGAG
GCCGACCACA GCTGGTGCTC GGGGCTGTCC GGGGCGCTGC TCGCGCACAC CGGGCAGGTC
GGGCAGGCGG CGGACGCGCA CACGCTGCAC GTCGACCGGT GCCTGAACGC GCTGGCGGTG
CACGAGCCGC TGCGCGACCT GAGCCTGTGC CACGGCGAGC TGGGCGTGGT GGAGGCGGTG
GCGGTGCTGG CCGAGCGGGG CCACGACCGC GCGGAGGCCA CCCGCTCCCG GCGGGCCGGG
GTGCTGCTCG GCGCGCTGGA GCAGGGCGGG GCGCGGTGCG GGACGCCGGG CGGGGTGCCG
TCGGCCGGGT TGCTGACCGG GTTGGCGGGG ATCGGGTACG GGTTGCTGCG ACTGGGCTTC
CCGACGAGCG TGCCGTCCGC GCTGCTGCTG GAGAACCGAT GA
|
|---|
| Protein sequence | MWGTTAVCDV DPVPPSVTRR APTTAWWAAG VRTVHREQQV SHGRPAWAAF TERACAHVPP
GRFPGGTWEE GFAFALRPLV RAATARDRRF RDDFARDLGL RLARTAARTL VVELHRWRLD
GRLRGLTSRD RFASFVEDLR PARLFAEYPV LARLLGQTCL QAVRAHREVL DHLADDRVAL
VAALMGGRDP GPLVGVSTSG DRHGGGRAVA VLTFADGRKV VHRPRPVEQH ALFADLLDWY
GGRTGLDLRV PPVLVRPGYG WVAFTEGAPC ADVTDLDRFY HRLGGLLALL HAVDATDAHY
ENLIACGDQP VLVDVETLFQ PTTGVPADPA ARALARSVQR TAVLPSVLLG EHGAQDVGGV
GGDAGDHPGD GVRWVDAGTD RMRLERGPVP VVVAGNRPVL DGRPAEPAEH TGALLAGFRL
GYDALCSWRE ELLERVRGFA GAPVRYVPRS TRVYAELLDE STHPDALRRA PERDLALELL
REESGDDRAL RALVPHEVAD LWAGDVPLFT TRPESVDVWT SVGERLPGVL DEPVLAAVER
KIAGLDEVDR HDQEWVIAAA LACRPAEVAH RTGGALRSSV GSAVPDPRRL LVAACGVADE
VLARSLVEGC GSGSGGVGGF GGGRVNWIGL ELVEDRHWAV APMGAGLSNG YTGVALFLAQ
VGALTGASRY TGPAREALAP VPGLLARFEA DPELALAVGV GGFHGMGGIC YALARVGRLL
GDDPEIAGWL ASAVRVLGIA AGIEPWEVER GNRGPARGGR VQGGPGRGSW GSAVAGGGVV
GGGVAGVVEG WAGGVAALVA VAEAAGGAVG AEALRVARVL AERLLAADVR GDGFARGRAG
VGWALLRYAR AAGDERCAVA GRALLRADRA LRQRLVDVRE ADHSWCSGLS GALLAHTGQV
GQAADAHTLH VDRCLNALAV HEPLRDLSLC HGELGVVEAV AVLAERGHDR AEATRSRRAG
VLLGALEQGG ARCGTPGGVP SAGLLTGLAG IGYGLLRLGF PTSVPSALLL ENR
|
|---|
| |