Gene Amir_4208 details

Gene Information

• Locus tag: Amir_4208
• ID: 8328401
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Actinosynnema mirum DSM 43827
• Kingdom: Bacteria
• Replicon accession: NC_013093
• Strand: -
• Start bp: 4959412
• End bp: 4961349
• Gene Length: 1938 bp
• Protein Length: 645 aa
• Translation table: 11
• GC content: 76%
• IMG OID: 644944672
• Product: Methionine--tRNA ligase
• Protein accession: YP_003101909
• Protein GI: 256378249
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0143] Methionyl-tRNA synthetase

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.0857223
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGATAACGC GCGCCTTCGA CCGGTCGGCG ATGAGCTGGT CCTACGAGAT GAGCCTGCAA 
CCGATGCTGT CGGCCGCCGA CATCGACGGC CTCCCGTTCG GCTCCGTCTT CGGCAGCGTC 
CCCCCGCGCA GCGTCTCGAA GCGGCACGCC CACCAGGACG GCGAGATGTT CATCGTCCTC 
GCGGGCCGGG CGACCGTGGT GCTCGGCGAC GAGGAGCGCG AGCTGGGGCC GGGCGGCGTC 
GTGCACCTGT CGCCCTTCGG CTACCACGAG ATCCGCAACG AGCACGACGA GCCGTTCGAC 
CTCGTCTCGA TCTACTGGGA GCACATCCCC AGCGCCGTGG CCGCCCTGGA GGAGACCCCG 
CCGCGCGCCT CGCTGCCGCA GCGGGCCCTG GTCTTCTGCC CGCCGCCCAC CCCCAACGGC 
GGCCTGCACC TGGGCCACCT CGCGGGCCCG TACGTCCGGG CCGACGTGCT GGTGCGCGCG 
CTGCGCAGCA CCGGCCGCGA CGCCAGGCAC GTCACCGGCA CCGACGACCA CCAGTCGCAC 
GTCGCCGTCA GCGCCCGCCT CGGCGGCGCC ACCCCCGAGC AGGTCGCCGC CTCCCACGGC 
GAGGCCATCC TGGCGACGCT GCGCGCGGCC GGGGTCGACT GCGACCGGCT CACCCGCCCG 
GCGACCGCGC CGGGGCACGC CGACCGGATC CGGGAGCTGA TCACCCGGCT CGCCGAGTCG 
CCCTCGGTCA CCGAGCAGGA GCGGGACACC GCCTACTGCG CCGCCTGCGA CCTGTCGCTG 
CACCAGGCGT TCGCGCGCGG CGCCTGCGCG CACTGCGCGG CCGACAGCGA CGGCGAGATC 
TGCGAGGCGT GCGGGCGGCC CAACGAGGCC AAGGACCTCG TGGACCCGCG CTGCAGGCTC 
TGCGGCGGCC CGGCCACCAC CCGCCCCGAG CGCGCGCTGT GGCTGGACAT GTCCGCCCAC 
GCCGAGCAGC TCGCCCGGTA CCTCAAGGAC TCGCACACCT CGCCCGACCT GCTCGCCCTG 
GTGGAGCGCC TGCTGGCCGA CGGCCTGCCG CCGTACCGGC TCGCCCGCCG CGCCGACTGG 
GGCGTCGAGC TGGCGGACGG CCAGCGCGTC GACGCCTGGG TCGACCTCGC GCTGACCTTC 
CTCGACGCCG CGCGCGCCGA GACCGAGCAG GACGGCCCCG CCAAGATCAC CCTGTTCCTC 
GGCTACGACA ACAGCTTCTT CTACGCCGTG CTCCTGCCCG CCGTGGCCTT CGCCGCCGGG 
CTGGCCGAGC ACCTGCCCGC CGCCTTCGTC ACCAACCAGT TCCTGCACCT GGACGACGCG 
AAGTTCTCCA CCAGCCGGGG CCACGCCATC TGGGCGGACC CCGCGCTGGC CGAGGCGGGC 
CCCGACGCCG TGCGGCTGGC GCTGCTGCGC AACGCCCCCG AGGGCCGCGT CACCCGGATC 
ACCCAGGAGC GGGCCGCCCT GCTCGCCCAG GACCCGCTCC ACCTGGCCGC CAAGGAGTGG 
CTCGCCGGGT TCGCGGGCGT CGGGGACGGG GTGGTGCCCG GCACCGGGGC GTGGACCGAC 
GCGCACCGCG AGTTCTACCG CAACCTCAAC CTCACCACCC GGCAGCTCGA CGGGCTGCTG 
ATCCCCGAGT CGTTCAGCGC GCGCGGCTAC GTCCGCCTGC TGGAGGCCTT CGTGGAGCGC 
GCCGCCGAGT TCCGGGCGAC CGAGGAGCCG CTGCGCGCGG TGCCCTCGCT CGCCGAGGAG 
GCGCGCACGA GCCTGGCCCT GGACCACCTG GCCGCCAAGG CGTTCGCCGC GCTGGCCTGG 
CCGATCACCC CCGACCTCGC CCTGCGGACC TGGCGGTGGC TCGGGCTGCC CGGCGAGCCG 
GTGCGCGAGG CGGACTGGTC GTTCCTGCCC GGCGGCACGC GCGTCACCTC GCCCTCGCCG 
CTGGACGCGC GGCCGTGA 

 

Protein sequence

MITRAFDRSA MSWSYEMSLQ PMLSAADIDG LPFGSVFGSV PPRSVSKRHA HQDGEMFIVL 
AGRATVVLGD EERELGPGGV VHLSPFGYHE IRNEHDEPFD LVSIYWEHIP SAVAALEETP 
PRASLPQRAL VFCPPPTPNG GLHLGHLAGP YVRADVLVRA LRSTGRDARH VTGTDDHQSH 
VAVSARLGGA TPEQVAASHG EAILATLRAA GVDCDRLTRP ATAPGHADRI RELITRLAES 
PSVTEQERDT AYCAACDLSL HQAFARGACA HCAADSDGEI CEACGRPNEA KDLVDPRCRL 
CGGPATTRPE RALWLDMSAH AEQLARYLKD SHTSPDLLAL VERLLADGLP PYRLARRADW 
GVELADGQRV DAWVDLALTF LDAARAETEQ DGPAKITLFL GYDNSFFYAV LLPAVAFAAG 
LAEHLPAAFV TNQFLHLDDA KFSTSRGHAI WADPALAEAG PDAVRLALLR NAPEGRVTRI 
TQERAALLAQ DPLHLAAKEW LAGFAGVGDG VVPGTGAWTD AHREFYRNLN LTTRQLDGLL 
IPESFSARGY VRLLEAFVER AAEFRATEEP LRAVPSLAEE ARTSLALDHL AAKAFAALAW 
PITPDLALRT WRWLGLPGEP VREADWSFLP GGTRVTSPSP LDARP